Gene Lcho_3569 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3569 
Symbol 
ID6160999 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3987413 
End bp3988501 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content67% 
IMG OID641666342 
Productphenylacetate-CoA oxygenase/reductase, PaaK subunit 
Protein accessionYP_001792588 
Protein GI171060239 
COG category[C] Energy production and conversion 
COG ID[COG0633] Ferredoxin
[COG1018] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 
TIGRFAM ID[TIGR02160] phenylacetate-CoA oxygenase/reductase, PaaK subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.211581 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACATCGG TTCTCTTTCA TTCATTGCGC GTGCGCGCGA TCGAGCCCGA TACCGCCGAA 
GCGGTGATCG TCACCTTCGA GGTACCGCCC GAACTGCGCG AGACCTTCGG CTTCACGCAG
GGCCAGTACC TGACGCTGCG CCACCACGTC GATGGCCAGG ACCTGCGGCG CTCGTATTCG
ATCTGCGCCG GTGTCGACGA CGGCGAGCTG CGCGTGGGCG TGCGCAAGGT CAAGGGCGGT
GTGTTCTCGA ACTGGATCAA CGCCGAGTTG AAGGTCGGCG ACCGCCTGCA GGTGATGGCG
CCGCAGGGCC GTTTCTTCGT ACCGATCGAG CCTGCAGCGC GGCGCCATCA CCTCGGCATT
GCCGGCGGCA GTGGCATCAC GCCGATCCTG TCGATCATGA AGACGGTGCT GGCGCGCGAG
CCGGCCAGCC GCTTCACGCT GATCTACGGC AACCGCTCGC TGCAGTCGAC GATGTTCAAG
GAGGAGATCG AGGACCTCAA GAACCGCTAC CTGACGCGGC TCGTCCTGCA CCACGTCTTT
TCGGATGAAC ACACCGATTC GCCGATCAAC GAAGGCCTGA TGAACCGCGA CAAGATCGGC
GAGTTCCTGC GCGTGCTGGT GCCGGCGGCG CAGATCGACC ACGCCTACGT CTGCGGTCCG
TTCCAGATGA ACGACGAGGC CGAGGCCGCG ATGCTGGCGG CGGGCGTGCC CGAAGAGCGC
ATCCACATCG AACGTTTCGG CGTGGCGCAG CCGGCCGGTG CGCCAGTCGG CGCGGTGGTG
CACGAGGCGC AGCCGGGCGA CGCCGAGCAG GCGCGTGTCA CCATCATCCG CGACGGCCTC
AGCCGCGAGA TCGTGTTCCG CCGCGAGCAG CCGAGCATCC TCGATTGCGC CAGCGCCGCG
GGGCTGGAGA TGCCGTTCTC GTGCACCTCG GGTGTCTGCG GCACCTGTCG CGCCAAGCTG
CTCGAAGGCC AGGTGCGCAT GGAGCGCAAC TTCGCGCTCG ACAAGGCCGA GGTGGCCGCC
GGCTACGTGC TGTGCTGCCA GGCGCACCCG CTGACCGAGC GCGTGGTGCT GAGCTTTGAC
GCTCGCTGA
 
Protein sequence
MTSVLFHSLR VRAIEPDTAE AVIVTFEVPP ELRETFGFTQ GQYLTLRHHV DGQDLRRSYS 
ICAGVDDGEL RVGVRKVKGG VFSNWINAEL KVGDRLQVMA PQGRFFVPIE PAARRHHLGI
AGGSGITPIL SIMKTVLARE PASRFTLIYG NRSLQSTMFK EEIEDLKNRY LTRLVLHHVF
SDEHTDSPIN EGLMNRDKIG EFLRVLVPAA QIDHAYVCGP FQMNDEAEAA MLAAGVPEER
IHIERFGVAQ PAGAPVGAVV HEAQPGDAEQ ARVTIIRDGL SREIVFRREQ PSILDCASAA
GLEMPFSCTS GVCGTCRAKL LEGQVRMERN FALDKAEVAA GYVLCCQAHP LTERVVLSFD
AR