Gene Lcho_3565 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3565 
Symbol 
ID6161059 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3982839 
End bp3983516 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content74% 
IMG OID641666338 
Product17 kDa surface antigen 
Protein accessionYP_001792584 
Protein GI171060235 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3133] Outer membrane lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.221572 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCGCA CCGTTTCCCC CGTCGTCGTC GAGCCGCGCA CCCATTCCGG TGGCGCCATG 
ACGATGACCC CGCATGCGGC CGCGCCGATG CCGGCCGCCG CCGGGCGTCT GCCCGTGGGC 
TGGATCGCCG CCGGCGTGCT GGCGCTCGGT GCCGTGGCCG CCGGCGCCTA TTACGCCGGC 
CGTGGTGCCG AGCGCGCGCC CGACGAGCCG GTGCCGGCCG CCGCGCAGAT GAACGCGCAG 
CAGGACAACG CCCAGGCCGA CGCGCCGAAG AAGGCGCCGG CCAAGCCCAC CTCGTCGGCC 
CGATCAAATG CCACCGGCAA CCCATCCGCC GATGCCGCAC CGGCGGTGGC CTGCCCGATG 
TGCGGCGTGG TCGAGTCGGT CACCGCCGTG CAGCGCAAGG GTGAAGGCAC CGGTGTCGGC 
GCCGTGGCCG GTACGGTGGT GGGCGGCGCG CTGGGCAACC AGGTCGGCGG CGGCAACGGC 
CGCACCGCGA TGACCGTGCT CGGCGCCATC GGCGGCGCGG TGGCCGGCAA CGAGGTCGAG 
AAGCAGGTCC GCGCCGTCAC GGTCTACCGC GTCAAGGTGC GCACCGATGG CGGCGAGGTG 
CGCACCATCG AGCAGAGCAG CTCGCCGGCG GTCGGCCAGC GTGTCAAGGT CGACGGCAAC 
CGCCTGCAGA TGCTCTGA
 
Protein sequence
MSRTVSPVVV EPRTHSGGAM TMTPHAAAPM PAAAGRLPVG WIAAGVLALG AVAAGAYYAG 
RGAERAPDEP VPAAAQMNAQ QDNAQADAPK KAPAKPTSSA RSNATGNPSA DAAPAVACPM 
CGVVESVTAV QRKGEGTGVG AVAGTVVGGA LGNQVGGGNG RTAMTVLGAI GGAVAGNEVE 
KQVRAVTVYR VKVRTDGGEV RTIEQSSSPA VGQRVKVDGN RLQML