Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3561 |
Symbol | |
ID | 6161055 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3980486 |
End bp | 3981373 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641666334 |
Product | ABC-3 protein |
Protein accession | YP_001792580 |
Protein GI | 171060231 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1108] ABC-type Mn2+/Zn2+ transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.232243 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACCTCT ACAGCCTGCT CATCCAGCCC TTTGCCGATT TCGGCTTCAT GCGCCGCGCC CTGGTCGCCA CGCTGGCGCT CGCGCTCGGC GGTGCGCCGC TGGGTTGCCT GCTGGTGCTG CGCCGCATGA GCCTGGTCGG CGAGGCGATG GCGCACGCGC TGCTGCCCGG CGCCGCGGTC GGTTATCTGG TCGCCGGGCT GTCGCTGACC GCGATGGGCA TCGGCAGCTT CGTGGCCGCG CTGCTGGTGG CGCTGCTGGC CGGCGCGGTC AGCCGCGCCA CCCGCCAGCG CGAGGACGCC AGCTTCACCG CCTTCTACCT GGTGGCGCTG GCGCTGGGCG TGCTGCTGCT GTCGCTGCGC GGCGGCGGTG CCGACCTGCT GCACGTGCTG TTCGGCAGCG TGCTGGCGAT CGACGACGCC GCGCTGGCGC TGATCGCCGC GGTCTGCAGC CTGACGCTGC TCGCGCTCGC GCTGGCCTGG CGGCCGCTGG TGATGGACAG CGTCGACGCC GGTTTCCTGC GCAGCGTCAG CGCCGCCGGG CCGTGGGTGC ACGGCCTGTT GCTGGTGCTG GTGGTGGCCA ATCTGGTCAG CGCCTTCCAG ACCCTGGGCA CGCTGATGGC GGTCGGCCAG ATGATGCTGC CGGCGATCGC CGCGCGCTTC TGGGCCGCCA GCCTGATCGG CATGGTCTGC GTGGCGCTGG CGATCGCGGT GCTGGCCGGC GCGGCCGGGC TGCTGCTGTC CTTCCACGCC GAACTGCCGT CGGGGCCGAG CATCGTGCTG GTCAGCGGCC TCGCGTATCT GCTGTCGGTG CTGCTGGGGC GGGTCGACGG CGTGCTGCCG CACCTGCTGC GGCGCGACCG CCATCCGGCC GCCGTGGAGG GCGCGTGA
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Protein sequence | MDLYSLLIQP FADFGFMRRA LVATLALALG GAPLGCLLVL RRMSLVGEAM AHALLPGAAV GYLVAGLSLT AMGIGSFVAA LLVALLAGAV SRATRQREDA SFTAFYLVAL ALGVLLLSLR GGGADLLHVL FGSVLAIDDA ALALIAAVCS LTLLALALAW RPLVMDSVDA GFLRSVSAAG PWVHGLLLVL VVANLVSAFQ TLGTLMAVGQ MMLPAIAARF WAASLIGMVC VALAIAVLAG AAGLLLSFHA ELPSGPSIVL VSGLAYLLSV LLGRVDGVLP HLLRRDRHPA AVEGA
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