Gene Lcho_3559 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3559 
Symbol 
ID6161053 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3978919 
End bp3979485 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content71% 
IMG OID641666332 
ProductABC-type metal ion transport system, periplasmic component/surface adhesin 
Protein accessionYP_001792578 
Protein GI171060229 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.222842 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACACG CATCTGTTTC CCCGCACCGC ACCTCGGATC GACTGCGCAA CTGCGTGTTG 
GCCACCGTGC TCGGTCTGGC GGCGTGGCAG GCCCATGCGG CCACTGGCGG CCACCAGCAC 
GGCGCGCTCA CGCTCGACAT CGCCATCGAC GGCCCGACGC TGGCCATCGA GATGGAAGCC 
CCGCTCGACA GCCTGCTCGG CTTCGAACAC GCACCGCGCA CCGCCGCGCA GAAGCAGGCC 
GCGCAGGCGC TGCTGGCGCG TCTGCGCCAG CCCGACGGCC TGTTCGTGCC CGACGCCGCC 
GCGGCCTGCA CGCTCAAGAG CGCCAGCGCC GATTCGGCCG CGCTCGCACC CGATACCAAG 
GCCGGCGGGC ACGCCGACCA CGCCGATCTC GACGCCCGCT ACGAATGGAC CTGCGGCAAC 
GCCGCAGCGC TGCGTTCGGT CGATCTCGGC GGCCTGCTCG ACGGCTACCA GCGCATCCAG 
ACCGTCGACG CGCAGATCGC CAGCCCCACC GGCCAGTTCA AGCAGCGCCT GAAGCGGCCG 
CAGAAGGTGC TGCGATGGGG CAAGTGA
 
Protein sequence
MTHASVSPHR TSDRLRNCVL ATVLGLAAWQ AHAATGGHQH GALTLDIAID GPTLAIEMEA 
PLDSLLGFEH APRTAAQKQA AQALLARLRQ PDGLFVPDAA AACTLKSASA DSAALAPDTK 
AGGHADHADL DARYEWTCGN AAALRSVDLG GLLDGYQRIQ TVDAQIASPT GQFKQRLKRP 
QKVLRWGK