| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3558 |
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| Symbol | |
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| ID | 6161197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3978200 |
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| End bp | 3978931 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641666331 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001792577 |
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| Protein GI | 171060228 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.171808 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGCAAG TGAACGCCGC GAGCCCGGTG CTCGCGCTGG CGCAAGTGCG CTTTCGCTGG
CCCGGTGCGG CGCGAGACGT GATCGACATC GACGAGCTGA CCCTGGCCGC CGGCCAGACG
CTGTTCCTGC GCGGCCCCAG CGGCTGCGGC AAGAGCACGC TGCTGTCGCT GGCCGCGGGC
GTGCAACTCG CCGGCAGCGG CACGGCGAGC CTGCTCGGCC GGAGCTGGTC GGGGCTGTCG
GCGTCGGCGC GCGACCGCCA GCGCGCCGCG CACATCGGCT ACATCTTCCA GCAGTTCAAC
CTGCTGCCGT ATCTGTCGGT GCTGGACAAC GTGCTGCTGC CGTGCCGGCT GTCGGCACCG
CGGGCTGCGC GGGCCGGTGC CAACCCGGCG GCGCAGCGCG CGCGAGCTGA GCAGCTGCTC
GGCCAGCTCG GCCTCGGCGA GGTCTTCTGG TCGCGCCGCG CGGTGCAGCT GTCGGTCGGC
CAGCAGCAGC GCGTGGCGGC GGCGCGGGCG CTGATCGGCG CGCCCGAGCT GGTGATCGCC
GACGAGCCGA CCTCGGCGCT CGACGAGACG CTGCGCGAGT CCTTCATGGC CGTGCTGCTG
CAGGCCTGCG CTGACGCCGG CAGCGCGCTG CTGTTCGTCA GCCATGACAC GCGGCTGGCG
GCGGCCTTCG ACCGCCAGCT CGATCTGCCG TCGATCAACC GCGCCGCGGC TGACAGCGAG
GTGGCGGCAT GA
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| Protein sequence | MGQVNAASPV LALAQVRFRW PGAARDVIDI DELTLAAGQT LFLRGPSGCG KSTLLSLAAG
VQLAGSGTAS LLGRSWSGLS ASARDRQRAA HIGYIFQQFN LLPYLSVLDN VLLPCRLSAP
RAARAGANPA AQRARAEQLL GQLGLGEVFW SRRAVQLSVG QQQRVAAARA LIGAPELVIA
DEPTSALDET LRESFMAVLL QACADAGSAL LFVSHDTRLA AAFDRQLDLP SINRAAADSE
VAA
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