| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3554 |
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| Symbol | |
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| ID | 6161193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3975365 |
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| End bp | 3975766 |
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| Gene Length | 402 bp |
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| Protein Length | 133 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641666327 |
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| Product | invasion gene expression up-regulator SirB |
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| Protein accession | YP_001792573 |
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| Protein GI | 171060224 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3094] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.108856 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCCCA TGGACTACCT CACCCTCAAA CTGATCCACC AGAGCGCCGT CGTGCTGTCG
ATCGGCGGTT TCGTGTTGCG CGGCTGGGCC AGCCTGAACG GCCAGGCCTG GGTGCGCGGC
CGCGCCGCCA AGACGTTGCC GCACCTGATC GACAGCGTGC TGCTGGCCTC GGCCATCACG
CTGGCCTGGC TGGCCGGACT GGTGCCCTGG CACACGCCGT GGCTGATGAG CAAGATCGTC
GGCCTGCTGG TCTACATCGG GCTCGGCATG ATCGCGCTCA AGCCCGGACG CGACCTGCGG
CTGCGCTGGG CGGCGTGGCT GGGAGCACTG GTGACCTTCG GCTTCATCGT CTCGGTGGCG
ATCACCAAGC AGCCGGCGGG CTTTCTGTTA CGGCTGGCTT GA
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| Protein sequence | MAPMDYLTLK LIHQSAVVLS IGGFVLRGWA SLNGQAWVRG RAAKTLPHLI DSVLLASAIT
LAWLAGLVPW HTPWLMSKIV GLLVYIGLGM IALKPGRDLR LRWAAWLGAL VTFGFIVSVA
ITKQPAGFLL RLA
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