| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3553 |
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| Symbol | |
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| ID | 6161192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3974001 |
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| End bp | 3975326 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641666326 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_001792572 |
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| Protein GI | 171060223 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.149056 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAGCG CCCTGCCCGA ACTGGTGTCC TACCTCGAAG GCCTGCCCGA GCCTCACATC
CTGTTCGACC GGCAGTACCG CATCCTGGCG GCCAACGCGG CCTACCGGCG CCAGTTCAGC
CCCGACGCCT CGGTGCTGGG GCGCACCTGC CACGAGGTTT CGCACCGTTT CCGCGTGCCC
TGCGATCAGG CCGGCGAGAC CTGCCCGCTG GTGCGCGCCC GCGAGTCGGG ACAGCGCGAG
CGCGTGCTGC ACCTGCACCA CACCGCACAG GGCGAGGCCT ACGTCGACAT CGAACTCGTG
CCCTTGCGCG ATGCCAGCGG CGAGCAGACC TGTTTCATCG AAAAGATGGC GCCGCTGCGC
GTGGCCCAGG GCGAGCCTGC CGCCGCAGGC CTGATCGGCC GCTCGCCGGC GTTTGCACGC
CTGCTCGAAC AGGTGGCGCG TGTCGGGCCG TCGAACGCCA GCGTGCTGCT GCTGGGTGAA
TCGGGCACCG GCAAGGAACT GATCGCCCAC GCCGTGCACG AGGCCAGCGC ACGCGCCGCG
CACCCGCTGG TGGTGGTGGA CTGCGCCAGC CTGCCGGAGT CGCTGTTCGA GAGCGAGCTG
TTCGGCCACG AACGCGGTGC CTACACCGGC GCCCATGCGG CCCGGCCTGG CTTGGCAGAG
GCCGCCAGCG GCGGCACGCT GTTCCTCGAC GAGGTGGGCG ACATCGCGCT GGCGATGCAG
GTCAAGCTGC TGCGGCTGCT CGAAAGCGGC ACCTATCGCC GGGTCGGCAG CACGGAGCTG
CGCCGCACCG ATCTGCGCGT GGTGGCGGCC ACCCATCGCG ACCTCAAGGC GATGGTGGCG
GACGGGCGCT TTCGCGAAGA CCTGTATCAC CGGCTCAGCA CGTTTCCGAT CCGGCTGCCG
GCCTTGCGCG AGCGGGCCGG CGACATCGCG CTGCTGGCCG TCGGGCTGCT GGCGCGGGTG
GCCCCGCAGC GGCGCCTCGG CCTGTCGCGC CAGGCACTGG CCCGGCTGGG CACGCAGCCC
TTTCCCGGCA ATGTGCGCGA GCTGCGCAAC GTGCTCGAAC GCGCCGCCCT GTTCACCGAC
GGCACGCTGA TCGACGACCT GCAGATCGAG CAGGCGCTCG CGGCCGACGG GCCCGTCGCA
CCGAGGGTGC CGGTGCGTGC AGCGGCCCCG CCAGAGGCCG GCCCCTCGTT GCGTGAGATG
GCGAGCGCGC AACTGCAGGC CCGACTCGAC GCCCACCACG GCAGCCGCGC CGAACTGGCG
CGCCAGCTCG GCATCAGCGA GCGCTCGCTG TACCGCAAGC TGCGGGCCCT GGCGCCGCGC
GAGTGA
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| Protein sequence | MTSALPELVS YLEGLPEPHI LFDRQYRILA ANAAYRRQFS PDASVLGRTC HEVSHRFRVP
CDQAGETCPL VRARESGQRE RVLHLHHTAQ GEAYVDIELV PLRDASGEQT CFIEKMAPLR
VAQGEPAAAG LIGRSPAFAR LLEQVARVGP SNASVLLLGE SGTGKELIAH AVHEASARAA
HPLVVVDCAS LPESLFESEL FGHERGAYTG AHAARPGLAE AASGGTLFLD EVGDIALAMQ
VKLLRLLESG TYRRVGSTEL RRTDLRVVAA THRDLKAMVA DGRFREDLYH RLSTFPIRLP
ALRERAGDIA LLAVGLLARV APQRRLGLSR QALARLGTQP FPGNVRELRN VLERAALFTD
GTLIDDLQIE QALAADGPVA PRVPVRAAAP PEAGPSLREM ASAQLQARLD AHHGSRAELA
RQLGISERSL YRKLRALAPR E
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