Gene Lcho_3551 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3551 
Symbol 
ID6160942 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3972349 
End bp3973017 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content69% 
IMG OID641666324 
Producthypothetical protein 
Protein accessionYP_001792570 
Protein GI171060221 
COG category 
COG ID 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0502988 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACAGC CTGCACCTGC TCACGAATCC GCGCATTCTT TCGAGGCCAC CGGCCCGGCC 
ACCACCCGCA GGTCGGCCAT CGGCCGCTTG GGCGGGCTGG CGGCAGCGGC GGTGTTGTGG 
CCGGTCGCGT CGGCCCGGGC CGCCGTCGAT GCCGCGAGCT TGCCCGAGCC CAAGCGCACG 
CGCGCGGCGC TCTACCTGGA GGCGCGCGAG GTGCCGGCCT TCATCGATGC GCAGGGCGGT 
GCGGCGCGTG TGCTGTTCCT CGATCTGCGC ACCCGCGCCG AGGCCATGTA CGTGGGTATG 
GCCACGCCGG TGGACGCGCT GGTGCCCTAC GTCGAGCATC AGGAACTGAT GACCGACTGG 
GACGCGCAGC GCAACATCTA CCGGCTCGAG CCGCTGCAGG ATTTCGTGCC CGAAGTGAAC 
CGGCGCCTGA GCGAAAAAGG TCTGGCCAAG ACCGATGTCG TGGTGCTGAT CTGCCGCTCG 
GGGGACCGCA GCAGCCGTGG CGCCAATCGC CTGGCCGATG ACGGCTACAC GCGGGTCTAT 
TCGGTGGTCG ACGGCTTCGA GGGCGACCTG TCCAAGGACG GCCGCCGCAG CGTCAACGGC 
TGGAAGAACG CCGGCCTGCC CTGGAGCTAC AAGCTCGACA AGTCCAAGCT GTATTTCCCG 
CGCGGCTGA
 
Protein sequence
MKQPAPAHES AHSFEATGPA TTRRSAIGRL GGLAAAAVLW PVASARAAVD AASLPEPKRT 
RAALYLEARE VPAFIDAQGG AARVLFLDLR TRAEAMYVGM ATPVDALVPY VEHQELMTDW 
DAQRNIYRLE PLQDFVPEVN RRLSEKGLAK TDVVVLICRS GDRSSRGANR LADDGYTRVY 
SVVDGFEGDL SKDGRRSVNG WKNAGLPWSY KLDKSKLYFP RG