| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3545 |
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| Symbol | |
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| ID | 6160936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3966245 |
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| End bp | 3968056 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641666318 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001792564 |
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| Protein GI | 171060215 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00514005 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACATCG ACAGTGATGA CACCGCCCAA GCCCATGATG CCCATGAAGC GCTGATGCAG
TTCCTGTACC GGGCCCCGAT CGGTCTGGCG CAGACCACGC TGGCCGGGGA GATCGAGATG
ATCAATCCGA TGTCGGCCCG GTTGCTGATG CCGCTGTCGC GTGACGGCGG TCTCGACAAC
CTGTTCGAGG TGCTCGACGG GTTTGCGCCC CAGCTGCGTG GTCTGGTGGC GGCGTTCGAG
CCGTCCAGCG GGGTGGTGTG CGAGTCGGTG CGCATGGCCA TCGAGGCCGG CACCGGTGGC
CTGGCCGAGG CCCAGGTGCT GTCGGTGAGC CTGATGAAGC TCGATTCGGC GCGACTGATG
GCCGTGCTCA GCGATGTCAC CCACGAAGTG CAGCGCGAAC AGCAGCACCT GGCGCGCCGG
CTCAGCGATG CGGCGCGCAT CGACAGCCTG ACGCAGATGC CCAACCGCGC CGCGGTGTGC
GATCAGATCC AGCGCGCTCT GCTGCTCGCG GCGACAGACG ATGAACCGGG CTTTGCGGTG
CTGTTCATGA ACTGCGACCG CTTCAAGCAG ATCAACGACA CCCTCGGCCA CGCCGTCGGC
GACGAGGTGC TGGGCCTGAT GGCCGACCGG TTGCGCGGCA CGCTGCGCCG CCACGATCGT
GTCGGCCAGA TCGACCCGGA CCAGCCGATG GCCGCACGCA TCGGCGGCGA CGAGTTCGTC
GTGATGCTCG ACGATCTGCG CCGCCCCGAC GATGTGCATG CGGTGGCGCG GCGGTTGCTC
GACGTGCTGT CCAAACCCTA TGGCATCGGC CGCCATCAGC TGCACTGCAG CGTCAGCATG
GGCATCGTGC TGGGGGCCCA GGCCCGCGGC GATGCCGACG CCGTGCTGCA GGACGCCAGC
ATCGCGATGG TCGAGGCCAA GCGCGCCGGT GCCGCACGTT ACGTGGTGTT CGAGCCGGCC
ATGCGCGAGC GCGCGGCGCA GCGCGGCGAC ATCGAATCCG AGCTGCGCCG GGCGCTGGCC
GAAGGCGAAC TCTTCGTCGT CTATCAGCCC GTCGTCGGCT TGCAGGGCGC GGACCTGGTG
GACGGCCGCA TCGACGCGTC GGCGGGGGTC GAGGCGCTGG TGCGCTGGCG CCATCCCCGG
CGCGGCCTGG TGCCGCCGCT CGAATTCATC GGCGTGGCCG AAGACTGCGG GCTGATCGGC
GCGCTGGGCG ACTTCGTGCT CGCCACCGCC TGCCATCAGT TCGTGCAGTG GCAGCAGGTG
CAGGGTGAAC GCGCGCCGCG CAAGCTGGCC GTCAACCTGT CGCGCGCCCA GCTCGGCCAG
CCCGGTTGGG TGGACGCGGT GCGGCAGATC CTGCAGACCA GCGGCATGGC GCCCGGCCAG
CTCCAGCTCG AAGTGACCGA AAGCCTGGCC GCGCAGGACG ATGGCGTGCG TTCGCGCCTG
CACGAGCTCA AGGCGCTCGG GCTGACGCTG GCGCTCGACG ACTTCGGCAC CGGCTATTCA
TCGCTGGCCA GCCTGCACCT GCTGCCGGTG GACACGGTCA AGATCGACCG GTCCTTTGTC
AGCCAGGTCG ACACCAGCCA CCACCACCGC GTGCTGATCG AGGCCACCGT GCGGGTGGCC
AACAGCCTGG GCATGAACAC CGTGGCCGAG GGCATCGAGA CCCGGGCCCA GGCCGACCTG
GTGCGCCAGC TCGGTTGTGA AAAAGGCCAG GGCTACTTTT TCAGCAAACC GCTGGCTGCG
GCCGACGTGG TGGGCTGGCT GGCGCGGCAG GGCCACGAGC AGCTGACGGC CCTGGCGGAC
AAGCAGGCCT GA
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| Protein sequence | MHIDSDDTAQ AHDAHEALMQ FLYRAPIGLA QTTLAGEIEM INPMSARLLM PLSRDGGLDN
LFEVLDGFAP QLRGLVAAFE PSSGVVCESV RMAIEAGTGG LAEAQVLSVS LMKLDSARLM
AVLSDVTHEV QREQQHLARR LSDAARIDSL TQMPNRAAVC DQIQRALLLA ATDDEPGFAV
LFMNCDRFKQ INDTLGHAVG DEVLGLMADR LRGTLRRHDR VGQIDPDQPM AARIGGDEFV
VMLDDLRRPD DVHAVARRLL DVLSKPYGIG RHQLHCSVSM GIVLGAQARG DADAVLQDAS
IAMVEAKRAG AARYVVFEPA MRERAAQRGD IESELRRALA EGELFVVYQP VVGLQGADLV
DGRIDASAGV EALVRWRHPR RGLVPPLEFI GVAEDCGLIG ALGDFVLATA CHQFVQWQQV
QGERAPRKLA VNLSRAQLGQ PGWVDAVRQI LQTSGMAPGQ LQLEVTESLA AQDDGVRSRL
HELKALGLTL ALDDFGTGYS SLASLHLLPV DTVKIDRSFV SQVDTSHHHR VLIEATVRVA
NSLGMNTVAE GIETRAQADL VRQLGCEKGQ GYFFSKPLAA ADVVGWLARQ GHEQLTALAD
KQA
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