| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3543 |
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| Symbol | |
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| ID | 6160915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3960444 |
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| End bp | 3965255 |
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| Gene Length | 4812 bp |
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| Protein Length | 1603 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641666316 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001792562 |
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| Protein GI | 171060213 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00143205 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCCGCAG GTGCCATCGT GCTGAGCCTG TGCGCGGCGG CCATCGCGGG CTGGCTGCTG
GTCGCGGCCG GCGACGCCCG CCCCGAAGCG CCGCAGCACG CCTGGGCGCC ATGGCTGGCG
AGCGCCGCCG GCCTGCTGGG CAACGCCGTG CTGGCGGTGT GGCTGTGGCG CCGGGTGCGC
CGCTGCCGGC AGGTCGAATC GCAGATGCAG CAGTGGCTGG CCGAACACGG GCTGCTCGCG
CTGGTGGCCC GCCGGACCTC CAACGCGGTG ATCATCACCG ACCGGGCGCT GCGCATCACC
TGGGTCAACG ACGCCTTCAC GCAGGTCTAC GGCTACAGCC CGGAGCAGGC GCTGGGCGCC
ACCCCCGGCC GCCTGCTGGG CCACCCGGAC AGCTCGCCGG CGGCGATCGA CACGCTGCTG
CGTTCGGCCG CGGCCGGCGT CGGCTGCCGG GTCGAGATCC TGAACCGGGC GGCCGACGGC
CACGACGTCT GGGTCGACAC CGAGGTGCAG CCGGTGCACG ACGACGCCGG CCAGGTGATC
GGCTTCGTCG AGATCGCCAC CGACATCAGC GCCAGCAAGC TCGCCGTGCA GGAGATCGCC
GACCAGCGCC GGCGGCTGGC CGCCATCATC GACGGCACCC AGGCCGGCAC CTGGGAACAC
GACCTGGCGA AAAGCGAGAA CCGCGTCAAC GCGGCCTACG CGCAGATGCT CGGCTACACG
CTGCCCGAGT ACACGGCGCT GCTGCGGGCG CATTCGTTCC CGTCGCTGGT GCATCCCGAC
GATCTGGCGC GCGTGGAGCA GGCGCGCGAG TCGCACCTGA CGGGACGCAG CAGCGAGTAC
GAGGCCGAGT TCCGGATGCG CCACAAGGCC GGCCACTGGG TCTGGATCCA GAGCCGCGGG
CGCGTGACCG GGCACGACGC GCACGGACGC CCGCTCGTCA TCGCCGGCAT CCACCTCGAC
ATCTCGGCGC GCAAGCACGC CGAGCTCGAA CTCACCCGCG GCCAGCAGCG CCTGGCCAAC
ATCCTGGCCG GCACCGACGT CGGCACCTGG GAATGGAATG TCGAGACCGG CGAAACCATC
TTCAACGAAC GCTGGGCCGG GATCGCCGGC TACACGCTCG ACGAGCTGGC GCCCACCCAC
ATCGGCACCT GGAGCGCGCT CACGCATCCC GACGACCTGC GCCGCTCGGC GGTGCTGCTC
GAGCACCACT TCAACGGCGC GCTGCCCGCC TACGAGTGCG AGGTGCGCAT GCGCCACCGC
GACGGCCACT GGGTCTGGGT GCTCGACCGC GGCAAGCTGT CGGGCCGCAG CGAGAGCGGA
CGCCCGCTGT GGATGGCCGG CACGCACATG GACATCAGCG AGCGCAAGCA CGCCGAAGCC
GCGCTGCGCG CCAGCCAGGA CCTGCTCGAC CGCACCGGCC GCATCGGCGG CGTGGGCGGC
TGGTCCTACG ACCTCGGCAC GCAGGAAATC CTCTGGACCG ACCAGACCTG CCGCATCCAC
GGCGTCGAGC CCGGACACCG TCCGACCCTG ACCGAGGTGA TGTCGTACTT CGACCCCGAA
AGCCGGCCGC TGCTCGAACA GGCGGTGCAA CGCAGCATCG CCACCGGCGA GGGCTACGAC
ATGGAGCTGC CGTTCACCAC CGCCGGCGGC CAGCACATCT GGGTGCGCGC CGTCGGCGAG
ACCGAATTCG TCGGCGACCA GGCGGTGCGC ATGCTCGGCA CGCTGCAGGA AGTGACCGCG
CGGCGCGAGC TGGAGTCGGA GCTGCGGCGC AACAACGAGG TGCTGGCCAG CGTGCTCGAG
AACCTGCCGT GCGGCCTGAG CGTGTTCGAT GCCGACGGCC TGCTGGTGGC CGCGAACGCC
CAGTTCCGCA GCCTGCTGGA CCTGCCCGAC CGCCTGTTCG AGGGCCCGGT CACGCGCTTC
GAGGACATCA TCCGCCACAA CGCCGAACAC GGCGAATACG GCCCCGACGA CATCGAGGCC
AAGATCCGCA CCATCGTCGA CCGGGCTCGT TCGCCGGTCG TGCAGCACCA GTTCGAGCGG
GTGCGCCCGG ACGGCACCTC GCTCGAGATC CGCGGTGGCC CGCTGCCCGC CGGCGGCTTC
GTGACCACCT ACACCGACAT CAGCGCACGC CGCAAGGCCG AGGCCGAGGT GCAGCGCAGC
GCGCAGCTGC TGCGCGGCGC CATCGACACC ATCGACGAGG CCTTCGTGCT CTACGACCCC
GACGACCGGC TGGTGTTCTG CAACGACAAG TACCGCCGCA TCTACGCCGC CTCGGCCGAC
CTGATCGTGC CCGGCACCAC CTTCGAGGAG ATCGTGCGCA AGGGCGCCGA ACGCGGCCAG
TACGTCGACG CGATCGGCCG CGTCGACGAC TGGGTGGCCG AGCGCATGGC CGCGCACCGT
GCCGGCAACG CCCCGCTGGT GCAGGCGCTC GACGACGGCC GCACGCTGCG CATCGTCGAG
CGCCGCATGC CCGACGGCCA CACCGTGGGC TTTCGCATCG ACATCACCGA ATTCCAGCGT
GCCCGCGAGG CGGCCGAAGC GGCCTCGCGC GCCAAGAGCG AGTTCCTGGC CAACATGAGC
CACGAGATCC GCACGCCGAT GAACGCCATC CTGGGCATGC TGGCGCTGCT GCACAAGACC
GAGCTGGCGC CGCGCCAGGC CGACTACGTC GCCAAGACCG AGGGCGCGGC GCGCTCGCTG
CTGCGCCTGC TCAACGACAT CCTCGACTTC TCCAAGGCCG AGGCCGAGCG CATGGTGCTC
GAGGCCCGGC CGTTCCGGAT CGACCAGCTG CTGCGCGACC TGTCGGTGAT CCTGTCGGCC
AACATCGGCG GCAAGGAGGT CGAGGTGCTG TTCGACATCG ACCCCACCCT GCCGCGCGCC
CTGGTGGGCG ACGCGATGCG GCTGCAGCAG GTGCTGATCA ACCTGGGTGG CAACGCCATC
AAGTTCACCG CCGAAGGCGA GGTGGTGGTG TCGGTGGCGG TGCGCGAACG CAGCGCCCTC
GGCGTGACGC TGCAGATCGC CGTGCGCGAC ACCGGCATCG GCATCGCCGC CGAAAACCAG
GCCCGCATCT TCAGTGCCTT CACGCAGGCC GAGGCCTCCA CCACGCGCCG CTTCGGCGGC
ACCGGCCTGG GCGTGGCGAT CAGCCAGCGG CTGGTGGCGC TGATGGGCGG CGAGCTGCAG
GTCGCGAGCG AACCCGGCCG CGGCAGCCGC TTCCATTTCT GCATCACGCT GCCGGTGGCG
CCCGAGCCGG CCGACGGCCC GGCCGACTCG CCGCCCCGTC TGGCGGCCCT GCACGCCCTG
GTGGTCGACG ACCACCCGAT CGCGCGCGAC GTGCTGGGTG GCATGTGCCG CTCGCTGGGC
TGGCAGGTCG ACCTGGCCGT CAGCGGCGAG CAGGCCCTGG CGCTCATGCA CGCCCAGGCC
GGCGCGGGCA ACAGCTACCA GGCGGTGCTG GTCGACTGGC AGATGCCCGG CCTCGACGGC
TGGGAGACCG CGCGGCGCAT CCGCGAGCGC GGCCTCGACG GTGCGGCGCC GATCGTCGTC
ATGGTCACCG CCCACGGCCG CGAGCTGCTG GCCCAGCGCA GCGAGCGCGA ACCGGGCGTG
CTCGACGGCT TCCTGGTCAA GCCGGTCACC GCGTCGATGC TGTTCGACGC CATCGCCGAT
GCCCGCCCGG CGCAGCCCGG CCCGCAAGCC CGCGCCCGGA ACGGGGCAGT CGGCCTGCAC
CGGCTGGCGG GCCTGCGGCT GCTGCTGGTG GAAGACAATC CGACCAACCA GCAAGTTGCG
CGCGAACTGC TCACCCAGGA GGGCGCGATC GTGCAGATTG CGAACCACGG CGAAGAAGCC
GTCGTGGCGG TGGCCGCAGC GACCCGGCCG TTCGATGTCG TGTTGATGGA CCTTCAGATG
CCCGTGATGG ACGGCTACAC CGCCACCCGC CGGATCCGCC AGAACCTCGG CCTGACGAGG
CTGCCGATCG TGGCCATGAC CGCCAACGCG ATGAGCACCG ATCGCGAGGC CTGCCTGGCC
GCGGGCATGG ACGACCACGT CGGCAAGCCC TTCGACATCG ACCACCTGGT GCAGGTGCTG
CGCCGCCAGG CCGGGCTCGC GCCATCGAGC GAACCCGCCG CGGCCGATGC ACGGCCCACC
CGCTTCGAGG CCTCGCCGGC GCTGCTTGCG GCGGCTGCCG ATGCGGGCGT CGACCTCGGC
GCCGCACTCG ATCGGCTCGG CGGCCGGCTG GCGGTCTACC GGCAGATGCT GCGGGTGTTC
GTGGACGACC TGGCGCTGCT GCCCGCGCAG CTGCGCGACG ACATCGCCTG CAGCGACCTG
GCCTCCGCGG GGCGGGCCCT GCACACCCTC AAGGGCGTCG CCGCGACGCT GGGCGCCACC
CGCCTGGCCC GCGACGCGGC GATCGGCGAG CAGGTGCTCG GCAACGGCGG CAACGCCACG
CAGGCACGGC CGCTGATCGA TCAGATCTGC CGCGCCATCA CCGCTGCGGG CCCGAACCTG
GCCGCGCTGC TGCAGGCCCT GCCGGCCGAG CCCGCATCGG CAGCCACGCC GGCACCGTCC
GGCCACGCCG CGTCGCAGCC CGATGCCGGC GCCGCCGACG CGACCGGCCT GCACCGCCGG
CTGCACGACC TGGGCGACCT GCTGCACAGC TGCGACATGG GCGCGATCGA CGCGCTGGCC
GAACTGCACC GGCACCCGGC GGCCGCCCTG CTCGGCGATC GCCTTCAGGC GCTCGACGAT
GCCGTCGAAC GGCTCGACTT CGAACGCGCC CTGCGCGCCT GCAACGAACT GATCCAGGCT
TACGCGCCAT GA
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| Protein sequence | MPAGAIVLSL CAAAIAGWLL VAAGDARPEA PQHAWAPWLA SAAGLLGNAV LAVWLWRRVR
RCRQVESQMQ QWLAEHGLLA LVARRTSNAV IITDRALRIT WVNDAFTQVY GYSPEQALGA
TPGRLLGHPD SSPAAIDTLL RSAAAGVGCR VEILNRAADG HDVWVDTEVQ PVHDDAGQVI
GFVEIATDIS ASKLAVQEIA DQRRRLAAII DGTQAGTWEH DLAKSENRVN AAYAQMLGYT
LPEYTALLRA HSFPSLVHPD DLARVEQARE SHLTGRSSEY EAEFRMRHKA GHWVWIQSRG
RVTGHDAHGR PLVIAGIHLD ISARKHAELE LTRGQQRLAN ILAGTDVGTW EWNVETGETI
FNERWAGIAG YTLDELAPTH IGTWSALTHP DDLRRSAVLL EHHFNGALPA YECEVRMRHR
DGHWVWVLDR GKLSGRSESG RPLWMAGTHM DISERKHAEA ALRASQDLLD RTGRIGGVGG
WSYDLGTQEI LWTDQTCRIH GVEPGHRPTL TEVMSYFDPE SRPLLEQAVQ RSIATGEGYD
MELPFTTAGG QHIWVRAVGE TEFVGDQAVR MLGTLQEVTA RRELESELRR NNEVLASVLE
NLPCGLSVFD ADGLLVAANA QFRSLLDLPD RLFEGPVTRF EDIIRHNAEH GEYGPDDIEA
KIRTIVDRAR SPVVQHQFER VRPDGTSLEI RGGPLPAGGF VTTYTDISAR RKAEAEVQRS
AQLLRGAIDT IDEAFVLYDP DDRLVFCNDK YRRIYAASAD LIVPGTTFEE IVRKGAERGQ
YVDAIGRVDD WVAERMAAHR AGNAPLVQAL DDGRTLRIVE RRMPDGHTVG FRIDITEFQR
AREAAEAASR AKSEFLANMS HEIRTPMNAI LGMLALLHKT ELAPRQADYV AKTEGAARSL
LRLLNDILDF SKAEAERMVL EARPFRIDQL LRDLSVILSA NIGGKEVEVL FDIDPTLPRA
LVGDAMRLQQ VLINLGGNAI KFTAEGEVVV SVAVRERSAL GVTLQIAVRD TGIGIAAENQ
ARIFSAFTQA EASTTRRFGG TGLGVAISQR LVALMGGELQ VASEPGRGSR FHFCITLPVA
PEPADGPADS PPRLAALHAL VVDDHPIARD VLGGMCRSLG WQVDLAVSGE QALALMHAQA
GAGNSYQAVL VDWQMPGLDG WETARRIRER GLDGAAPIVV MVTAHGRELL AQRSEREPGV
LDGFLVKPVT ASMLFDAIAD ARPAQPGPQA RARNGAVGLH RLAGLRLLLV EDNPTNQQVA
RELLTQEGAI VQIANHGEEA VVAVAAATRP FDVVLMDLQM PVMDGYTATR RIRQNLGLTR
LPIVAMTANA MSTDREACLA AGMDDHVGKP FDIDHLVQVL RRQAGLAPSS EPAAADARPT
RFEASPALLA AAADAGVDLG AALDRLGGRL AVYRQMLRVF VDDLALLPAQ LRDDIACSDL
ASAGRALHTL KGVAATLGAT RLARDAAIGE QVLGNGGNAT QARPLIDQIC RAITAAGPNL
AALLQALPAE PASAATPAPS GHAASQPDAG AADATGLHRR LHDLGDLLHS CDMGAIDALA
ELHRHPAAAL LGDRLQALDD AVERLDFERA LRACNELIQA YAP
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