Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3541 |
Symbol | |
ID | 6160913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3958481 |
End bp | 3959077 |
Gene Length | 597 bp |
Protein Length | 198 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641666314 |
Product | hypothetical protein |
Protein accession | YP_001792560 |
Protein GI | 171060211 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1280] Putative threonine efflux protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0000708449 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCCCCTCG CCGACTACCT CGCGCTGCTG GCGCTCATCA CCGCGATGGC GTTCACGCCC GGGCCCAACA CCACGCTGTC GACCGCGCTG GCGGCCAACT TCGGCCTGCG CGGCGCGCTG CGTTTCGTGG TCTCGGTGCC GGTCGGCTGG ACGCTCCTGC TGCTGTGCGC CAGCCTGGGT CTCGCCGGCG CGATCCAGGC CTGGCCGGCG CTGGGCTGGG CCATCAAGGC GGTCGGGCTG ACGTATCTGT GCTGGCTGGC CTGGCGGCTG TGGGGCGCCG ATCGGCTGGG CGAGGCCGAT GGCGCCGGCC TGCGGGTCGG TTTCCGGCAA GGTGTGGCGC TGCAGTTCGT CAACATCAAG GCCTGGATGG CCGCGCTCAC CGTCACCGCC GGCTGGGTGC TGCCCGGGCC GCTGGGCGAG CGCCTGCTGG TGGTCGCACC GACCATGGTG TTCTATGCCT TCGCCAGCAA TTTCAGCTAT GCGCTGATCG GCTCGCTGCT GCGCCGCTGG CTGACGGTGG GGCGGCGGCT GGCCTGGTTC AACCGCGGCA TGGCGCTGGT GCTGCTGGCC ACCGCGGTGT GGATGGCGCG GACCTGA
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Protein sequence | MPLADYLALL ALITAMAFTP GPNTTLSTAL AANFGLRGAL RFVVSVPVGW TLLLLCASLG LAGAIQAWPA LGWAIKAVGL TYLCWLAWRL WGADRLGEAD GAGLRVGFRQ GVALQFVNIK AWMAALTVTA GWVLPGPLGE RLLVVAPTMV FYAFASNFSY ALIGSLLRRW LTVGRRLAWF NRGMALVLLA TAVWMART
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