Gene Lcho_3541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3541 
Symbol 
ID6160913 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3958481 
End bp3959077 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content72% 
IMG OID641666314 
Producthypothetical protein 
Protein accessionYP_001792560 
Protein GI171060211 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0000708449 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCCCCTCG CCGACTACCT CGCGCTGCTG GCGCTCATCA CCGCGATGGC GTTCACGCCC 
GGGCCCAACA CCACGCTGTC GACCGCGCTG GCGGCCAACT TCGGCCTGCG CGGCGCGCTG
CGTTTCGTGG TCTCGGTGCC GGTCGGCTGG ACGCTCCTGC TGCTGTGCGC CAGCCTGGGT
CTCGCCGGCG CGATCCAGGC CTGGCCGGCG CTGGGCTGGG CCATCAAGGC GGTCGGGCTG
ACGTATCTGT GCTGGCTGGC CTGGCGGCTG TGGGGCGCCG ATCGGCTGGG CGAGGCCGAT
GGCGCCGGCC TGCGGGTCGG TTTCCGGCAA GGTGTGGCGC TGCAGTTCGT CAACATCAAG
GCCTGGATGG CCGCGCTCAC CGTCACCGCC GGCTGGGTGC TGCCCGGGCC GCTGGGCGAG
CGCCTGCTGG TGGTCGCACC GACCATGGTG TTCTATGCCT TCGCCAGCAA TTTCAGCTAT
GCGCTGATCG GCTCGCTGCT GCGCCGCTGG CTGACGGTGG GGCGGCGGCT GGCCTGGTTC
AACCGCGGCA TGGCGCTGGT GCTGCTGGCC ACCGCGGTGT GGATGGCGCG GACCTGA
 
Protein sequence
MPLADYLALL ALITAMAFTP GPNTTLSTAL AANFGLRGAL RFVVSVPVGW TLLLLCASLG 
LAGAIQAWPA LGWAIKAVGL TYLCWLAWRL WGADRLGEAD GAGLRVGFRQ GVALQFVNIK
AWMAALTVTA GWVLPGPLGE RLLVVAPTMV FYAFASNFSY ALIGSLLRRW LTVGRRLAWF
NRGMALVLLA TAVWMART