| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3539 |
|---|
| Symbol | |
|---|
| ID | 6160911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3956257 |
|---|
| End bp | 3957480 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641666312 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001792558 |
|---|
| Protein GI | 171060209 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.00400893 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCGA CCGCATCCAA TCCCCTCTGG CAGCAGGCGC GCCGCAGCGC CCGCCTCAAC
CCGTCCATCA TCCGCGAGAT CCTCAAGGTG ACCGAGCAGC CCGGCATCCT GTCGATGGCC
GGCGGCCTGC CGTCGCCCGA CACCTTTCCG ATCGAGGCGA TGCGCGAGGC CAGCGATCGG
GTCCTGCGCG ACTGCCCGCG CGAGGCGCTG CAATACGCCG CCAGCGAGGG TTACGGGCCG
CTGCGCGAGT GGGTTGCGGC GCACCTGGGC GCGCAGGGCA TGCAGGTCGG TGCCGACCAG
GTGCTGATCA CCACCGGCTC GCAGCAGGGC CTCGATCTGG TCGCCAAGGT GATGGTCGAT
CCGGCCGCGC CGGTGGCCGT GGAGACGCCC ACCTACCTCG GCGCGCTGCA GGCGTTCGCG
CCGTTCGAGC CGGTGTTCGT CAACGTCGCG GGCGACGAGT CCGGCCCGCT GCCGCAGGCC
GTCGCCGAGC TGCCGCGGCT GGCGCCGGGC TGCCGGTTCT TCTACGTGCT GCCGAACTTC
CAGAACCCGA CCGGGCGCCT GATTCCGCAG GCGCGCCGGG ACGAGCTGAT CGCCGCGGCA
CAGCGTGCCC GCCTGCCGCT GCTCGAGGAC AACCCCTACG GCGACCTCTG GTACGAAGCG
CCGCCACCCG CGCCGCTGGC CGCGCGTTGG CCCGAGGGCG TGATCTACAT GGGTTCGTTC
TCGAAGATCC TCGCCCCCGG CCTGCGGCTG GGTTACGTGG TGGCGCCGCG CGAGCTGTGC
CCCAAGCTGC TGCAGGCCAA GCAGGCCGCC GACCTGCACA CGCCGAGCTT CAACCAGCGG
CTGGTCCACG AGGTCATCCG CGACGGTTTC CTCGATCGCC ACACGCCCAC CATCCGCGCC
CTCTACCGCA CCCAGCGCGA CGCCATGCAG GCTGCCCTGC TGGCGCACAT GCCCGAGGGC
ACGCAGTGGT CGGCGCCGCA GGGCGGCATG TTCTTCTGGC TGCGCCTGCC CGAGGGCATC
GACGCGCTGG CGCTGCTGCC GCAGGCCGTG CGCGAGGGCA TCGCCTACGT GCCGGGGTCG
GCCTTCTACG CCCACGCCGC CGATCCGCGC ACGCTGCGGC TGTCGTTCGT GACGCTGAGT
CCGGCCGACA TCGCCACCGG CGTGGCCGTG CTGGGCCGGG TGCTGCGCGA GCAGCTGGCC
GACGTGGCCC AGTCGGCCCC CTGA
|
|---|
| Protein sequence | MTSTASNPLW QQARRSARLN PSIIREILKV TEQPGILSMA GGLPSPDTFP IEAMREASDR
VLRDCPREAL QYAASEGYGP LREWVAAHLG AQGMQVGADQ VLITTGSQQG LDLVAKVMVD
PAAPVAVETP TYLGALQAFA PFEPVFVNVA GDESGPLPQA VAELPRLAPG CRFFYVLPNF
QNPTGRLIPQ ARRDELIAAA QRARLPLLED NPYGDLWYEA PPPAPLAARW PEGVIYMGSF
SKILAPGLRL GYVVAPRELC PKLLQAKQAA DLHTPSFNQR LVHEVIRDGF LDRHTPTIRA
LYRTQRDAMQ AALLAHMPEG TQWSAPQGGM FFWLRLPEGI DALALLPQAV REGIAYVPGS
AFYAHAADPR TLRLSFVTLS PADIATGVAV LGRVLREQLA DVAQSAP
|
|---|
| |