Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3534 |
Symbol | |
ID | 6161274 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3952363 |
End bp | 3953262 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641666307 |
Product | SMP-30/gluconolaconase/LRE domain-containing protein |
Protein accession | YP_001792553 |
Protein GI | 171060204 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3386] Gluconolactonase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.0305763 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCTCG ACCTGATCTA CGCCGTCAGT GCCCCGATGC TGCTCGGCGA GTCCCCCATG TGGCACCCGC AGGAGCAGTT GCTGTACTGG GTCGACATCC CCGGCAAGCG CCTGCATCGG CTCGATCCGG GCAGCGGTGC CCAGCGCCAC TGGGATTTCC CGTGCGAGCC GGCGGCCTGC GCGCCGGTGC TGGGTGGCGG CCTGCTGCTG GCCATGCGCG ACGGCCTGTG GCGCTTCGAC CCCGAAACCT CGTTGCGCAG CCTGCTGTGC GAGCCGCCCT ACGACCCGTC GAGCGAACGC TTCAACGACG GCAAGTGCGA TCCGCTGGGG CGCTTCTGGG TCGGCACCAT CTACGAGCCG CGCGAGCCCG CGCGAGCCGC GCTGTACCGC TGGCACGCAC GCAAGCTCGA TCGCATGGCC GGAGACATCA CGGTCTCGAA CGGCCTGGGC TGGAGCCCCG ATGCCCGCAC GATGTACTGG TCCGACACCA AGGCTCACAC GGTCTACGCC TTGGACTTCG ATGTCGGTGA GGGCGCCGTG TCGCAGCAGC GCGTGTTTGC CAGCTTCGAG CGCAAGCGGC CGGATCAGGA TCTGCGCCAT TACGGCGGCC GCCCGGACGG CGCGGCGGTC GATGCGCAGG GCTGCTACTG GGTGGCGATG TTCGAGGGCC AGCGTCTGCT GCGTCTGTCG CCGCAAGGCA CGGTGCTGCG CGAGCTGGCC TTGCCGGTGC GCTGTCCGAC CATGCCGTGT TTCGGTGGGG CGGACCTGCG CACCCTGTAC ATCACGACCG CGCGCGAGAA CCGGCCCGCC CCAGAACTGG CCGAACAGCC GCTGGCGGGC TGTGTGCTCT CATTGCGGGT CGACGTGCCT GGCCTGCCGG TGAACTACGC GAGGCTTTGA
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Protein sequence | MSLDLIYAVS APMLLGESPM WHPQEQLLYW VDIPGKRLHR LDPGSGAQRH WDFPCEPAAC APVLGGGLLL AMRDGLWRFD PETSLRSLLC EPPYDPSSER FNDGKCDPLG RFWVGTIYEP REPARAALYR WHARKLDRMA GDITVSNGLG WSPDARTMYW SDTKAHTVYA LDFDVGEGAV SQQRVFASFE RKRPDQDLRH YGGRPDGAAV DAQGCYWVAM FEGQRLLRLS PQGTVLRELA LPVRCPTMPC FGGADLRTLY ITTARENRPA PELAEQPLAG CVLSLRVDVP GLPVNYARL
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