| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3524 |
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| Symbol | |
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| ID | 6161803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3943536 |
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| End bp | 3944606 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641666297 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_001792543 |
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| Protein GI | 171060194 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.00974086 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTACGCCG CACTGCAAAA CGACAACTTC CTGCGCGCCC TGCGCCGCCA GCCGACCGAC
CACACCCCCA TCTGGCTGAT GCGCCAGGCC GGGCGTTATC TGCCGGAGTA CTGCGCCACC
CGCGCCAAGG CCGGCAGCTT CATGGGGCTG GCCACGAACG TCGATTTTGC GACCGAGGTG
ACGCTGCAGC CGCTCGAGCG TTATGCGCTC GACGCCGCGA TCCTGTTCTC CGACATCCTG
ACCGTGCCCG ACGCGATGGG CCTGGGTCTG AGCTTTGCGG CCGGCGAAGG CCCGCGTTTT
GCCACGCCGG TGCGTGACGA AGCCGCCGTG GCCGCGCTCG AAGCGCCGGA CATGGCCAAG
CTGCAGTACG TGTTCGACGC CGTGACCTCG ATCCGGCGCG CACTCGACGG CCGTGTGCCG
CTGATCGGCT TCTCGGGCAG CCCGTGGACG CTGGCCTGCT ACATGGTCGA AGGCCGTGGC
AGCGACGACT ACCGGCTGGT CAAGACCATG CTGTATCAGC GCCCCGACCT GATGCACCGC
ATGCTGGCCG TGACCGCCGA TTCGGTGGCG GCCTACCTGA ACGCCCAGAT CGAAGCCGGC
GCGCAGGCCG TGATGATCTT CGACAGCTGG GGCGGCGTGC TCGCCGACGG CGCGTTCCAG
ACCTTCAGCC TGGCCTACAC CCGGCGCGTG CTGGCGCAGC TCAAGCGCGA ACACGACGGC
CAGCAGATCC CGCGCATCGT CTTCACCAAG GGCGGTGGCC TGTGGCTCGA CGAGATCGCC
GCGTGCGACA CCGATGCGGT CGGCCTCGAC TGGACCGTCA ACCTCGACCA GGCCCGCCGG
CGAGTCGGCC ACAAGGTTGC GCTGCAGGGC AACCTGGACC CGAACGTGCT GTTCGCGTCG
CCCGAGCAGA TCACGCGCGA GGCCCAGGCC GTGCTCGACA GCTTCGGCCC GCACCCCGGC
CACATCTTCA ATCTCGGCCA CGGCATCAGC CAGTTCACGC CGCCGGAGGC GGTGTCGGTG
CTGGTCGACG CGGTGCATGC GCATTCGCGC CGCTGGCGCG CTCAGACCTG A
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| Protein sequence | MYAALQNDNF LRALRRQPTD HTPIWLMRQA GRYLPEYCAT RAKAGSFMGL ATNVDFATEV
TLQPLERYAL DAAILFSDIL TVPDAMGLGL SFAAGEGPRF ATPVRDEAAV AALEAPDMAK
LQYVFDAVTS IRRALDGRVP LIGFSGSPWT LACYMVEGRG SDDYRLVKTM LYQRPDLMHR
MLAVTADSVA AYLNAQIEAG AQAVMIFDSW GGVLADGAFQ TFSLAYTRRV LAQLKREHDG
QQIPRIVFTK GGGLWLDEIA ACDTDAVGLD WTVNLDQARR RVGHKVALQG NLDPNVLFAS
PEQITREAQA VLDSFGPHPG HIFNLGHGIS QFTPPEAVSV LVDAVHAHSR RWRAQT
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