| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3510 |
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| Symbol | |
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| ID | 6161355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3924279 |
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| End bp | 3925688 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641666283 |
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| Product | exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
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| Protein accession | YP_001792529 |
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| Protein GI | 171060180 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
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| TIGRFAM ID | [TIGR03013] sugar transferase, PEP-CTERM system associated
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00163639 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTCGAG TTTTTCAGCA CCGCACGTCG GGTACGCACT TCGTCGAGTT GCTCGCAGAT
GGACTGCTCT GCTTCATCGC CACGTTGTTG TCCGCGATGA CCTTGTCGCA GGCGGCTTCC
GGTGCTTCAG CGATGGCATC GTTGACGACC CCCAGCGTCT TGCTGTCGGC TTGCGCCTTC
GCCCTCGTCA TGGCGTTGAT GTATTCCTTC GTGGGGCTGT ATCGCCATCG CAACCTGGGA
ATCCTTCCCC TCGTGTTGCG CATCGCCTTC GTGTTTGCGG TCGGCGGCTA CATCACCTAC
CTGGCAATCA AGTTTGTCGA CTACGACGGC TATGCGAGCC GTCTGGTGGG TTACTCGCTG
GTCTACCTGC TGGCCGGCAT GGCGGTCTAC CGCGGTGCAG CCTGGATGGT GCGTCGCGCA
GTCGGCATCC GTCGTGTCCT GATCGTCGGC AGCGGTGCCG AGGCTCAGCA GGTCTGCACC
GATCTGCGCT CGGCGGATCA ATGGATCGGT TACGAGGTGG TCGGTTTCTT CCCGTCTGCC
GCCGACTCGG CTTCCAGCCG CACTTCGCCG GATGCGCCGA CCTTCAACAG TCAGAGCAAG
CTGTCCGAAC TGGTTCGTGC CCACCGCGTC GACGAGATCA TCGTGGCGGT GCGTGAGCAG
CGCGGTGGGG GTGTGCCGAT GGATCAGTTG CTCGATTGCC GCATTGCGGG CGTGCCGATC
CTCGATCTGG CGGGGTTCTA CGAGCGCACC AAGGCTGAAG TTCCGGTGGA CAGCCTGAAG
GCCAGCTGGC TTGTCTACGG TGACGGTTTC GTCCAGGGGC GGGCACGGGA GATCACCAAG
CGCGTGTTCG ACATCGTCAG TTCGGCCACC TTGCTGGTGC TGGGTGCGCC GCTGATGGCG
CTGACCGCGG TCATGATCCG GCTCGACAGC CGTGGCCCGA TTCTTTATCA GCAAGAGCGC
GTCGGTCTCG GCGGCAAGAC CTTCCAGTGC ATCAAGTTCC GCAGCATGCG CACCGATGCC
GAGAAGGATG GCGTGGCTCG CTGGGCGACC AAGAATGACA ACCGCATCAC CCGTGTCGGC
GCCTTCATCC GCAAGACCCG CATCGATGAG CTGCCGCAAC TGTTCAGCGT TCTGCGCGGT
GAGATGTCGA TGGTCGGTCC GCGTCCGGAG CGTCCGTCGT TCGTGGCGCA GTTGCGGGAA
CAGATTCCTT ACTATGACCT GCGCCACACC GTCAAGCCGG GCCTGACCGG CTGGGCACAG
GTGCGCTTCT CGTACGGCGC GTCGTTGGAC GATGCGCGTC GCAAGCATCA GTTCGATCTG
TACTACGTCA AGAACAACTC CCTGCTGCTC GATCTGCAGG TGCTGATCGA GACCGTCAGC
GTGGTTCTTT TCCGAGAAGG CGCACACTGA
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| Protein sequence | MFRVFQHRTS GTHFVELLAD GLLCFIATLL SAMTLSQAAS GASAMASLTT PSVLLSACAF
ALVMALMYSF VGLYRHRNLG ILPLVLRIAF VFAVGGYITY LAIKFVDYDG YASRLVGYSL
VYLLAGMAVY RGAAWMVRRA VGIRRVLIVG SGAEAQQVCT DLRSADQWIG YEVVGFFPSA
ADSASSRTSP DAPTFNSQSK LSELVRAHRV DEIIVAVREQ RGGGVPMDQL LDCRIAGVPI
LDLAGFYERT KAEVPVDSLK ASWLVYGDGF VQGRAREITK RVFDIVSSAT LLVLGAPLMA
LTAVMIRLDS RGPILYQQER VGLGGKTFQC IKFRSMRTDA EKDGVARWAT KNDNRITRVG
AFIRKTRIDE LPQLFSVLRG EMSMVGPRPE RPSFVAQLRE QIPYYDLRHT VKPGLTGWAQ
VRFSYGASLD DARRKHQFDL YYVKNNSLLL DLQVLIETVS VVLFREGAH
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