| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3509 |
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| Symbol | |
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| ID | 6160956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3923414 |
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| End bp | 3924055 |
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| Gene Length | 642 bp |
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| Protein Length | 213 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641666282 |
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| Product | polysaccharide export protein |
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| Protein accession | YP_001792528 |
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| Protein GI | 171060179 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | [TIGR03027] putative polysaccharide export protein, PEP-CTERM sytem-associated |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000101119 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGATTTG ATCTGGCACC AATCCGTATG GGGCGCATTC TGGGGCTGTT GCTGGCCAGC
CTTTCCGTGG TCGTGGGTCT GGCTGCCTGC GGCACGACGA ACAACTATCC GCCCGCACCT
CGTGCTGCGG AGACGGTCGG CCATCGCTAC AAGATCGGGC CCCTCGACAC GCTGAACATC
GTCGTCTGGC GCAATCCTGA ACTCTCCGCG AACGTGACGG TGCGTCCTGA CGGACGGATC
TCCACGCCCC TGGTCGATGA CGTGCTGGCG GCAGGCAAGA ATCCCGCCGA TCTGGCGCGT
GAAATCGAGC AACTGCTCGC TCGGGTGATC CGCGATCCGG TCGTGACCGT CGTCGTGAGC
ACCTTCCAGG GCGCATTCGG CGAGCAGATC CGCATCGTCG GCGAGGCGAC TCGTCCGCAG
AGCGTGCCGT TTCGCCAGAA CATGACCATC CTCGACGTCA TGATTCAAGC CGGCGGTCTG
ACCGACTTCG CTGACGGCAA CGGCGCCGTT CTGGTGCGGG GCGCGGAAGG CGGCAAGCAG
TACAGCGTGC GCCTGAAGGA CCTGCTCAAG CGCGGTGACA TCTCTGCCAA CGTCGACGTC
CGACCGGGCG ATATCGTCAT CGTGCCGCAA AGCTGGTTCT GA
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| Protein sequence | MRFDLAPIRM GRILGLLLAS LSVVVGLAAC GTTNNYPPAP RAAETVGHRY KIGPLDTLNI
VVWRNPELSA NVTVRPDGRI STPLVDDVLA AGKNPADLAR EIEQLLARVI RDPVVTVVVS
TFQGAFGEQI RIVGEATRPQ SVPFRQNMTI LDVMIQAGGL TDFADGNGAV LVRGAEGGKQ
YSVRLKDLLK RGDISANVDV RPGDIVIVPQ SWF
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