Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3505 |
Symbol | |
ID | 6160952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3916740 |
End bp | 3919235 |
Gene Length | 2496 bp |
Protein Length | 831 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641666278 |
Product | secretion ATPase |
Protein accession | YP_001792524 |
Protein GI | 171060175 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
TIGRFAM ID | [TIGR03015] putative secretion ATPase, PEP-CTERM locus subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0000001058 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTACGAGT CCTACTTCGG TTTCCACGGG CAACCGTTTC AGCTCAATCC CGATCCGGCG TTCTTCTTCA ACAGCCGGGG TCACGGTCGG GCGCTCGCTT ATCTGCAGTA CGGCGTCACC CAGTCGGAGG GCTTCATCGT CATCACCGGC GAGATCGGTG CCGGCAAGAC GACCCTGGTC CGCATGCTGC TCGAGGGGCT CGACCGCCAG AAGGTCCTGC CTGCCCAGAT CGTTAGCACG CAGCTCGAGT CCGGGGAGTT GCTGCAGGCC ATCATCACCG CGTTCGGCAT CCCGTCGCAG GGGACATCGA AGGCGCACCT GATCGCCACG CTCGAAGCCT TCCTGACCGC GCTGGCCGCA CAGGGCCGGC ATGCCTTGCT GATCGTCGAC GAGGCCCAGA ATCTGGATCC ACGCGCGGTC GAGGAGCTGC GCATGCTGTC GAACTTCCAG CTCGGCAACA AGGCGCTGCT GCAGAGTTTC CTGGTCGGCC AGCCCGAGTT GCGCCGCCTG CTCGAATCGC CGTCGATGGA GCAGTTGCGC CAGCGTGTCA CGGCCTCCTA TCACCTCGGG CCGCTCGGCA TCGAAGAAAC ACAAGGCTAT GTTCAGCACC GCCTCAAGCA CGTGGGCTGG AGTGGCCGGC CCTCGTTCGA CGAGGGTGCT TTCGACAGCC TCTTCCGCTG GACGGGGGGC GTGCCGCGCC GCATCAACCG GCTGTGCAAC CGTGTCCTCC TGGCCAGCTT TCTGGATGGC ACCGATGTCG TGAACGAGGC GCTGGTCGAA CGCACGGCAC TTGAACTGCG CGAGGAAATC GGCGAATCCG ACTTCACGCC GTCGGTCGTT CCGCAGCGTG CGCCTGCCGC GCCGGTCGTT GCACCACGGA CCGTCGAGCC TGAACCGATT GCCGCGCCGG CTGTCGATCC GCAGCCCGAG TCGGTAGCCG TGCCCGAGGA GGCCGCTGCT GCCGATTCGA CACTCGCCGA CATGGCTGTC GAGGCAGCCG AGCTGGCGAC GTTGACCGAC GCGGATCCCC TGCTGGTCGA ACCGGTCGGC GACGATCTGC TCGAAGATGT CGACGCCTTG CTGGCGGTTT CGGCGCGTCA GCTGGCGGTG ATCGCCGCAC GGGTCCAGGC CGATTCCGCG CTGGATCTCG AATCGGTCGC GAAGCGGGTG ATGCTGGAAC AGCCGGTCGC GCCGCTGCCC GCCATCGCGG TCGAGCGCAC CCAGAGAGCC GGGATGCCGC CTCGATCCGG CGTGGTTCTT TGTGTCGCCG ACACGGCCAG CGCGGCGCTC AAGTTCGCGG CCCTGGCCAA GCGCATGGCC GAGCAGGCCG GCGCTGCGCG CATGGTGCTG GTCAATCCGG GTGTCAAGGC GACGGTCTGG CCCTGGGAGC AGATGGAGCG TCTGCTGCCG TCACTTGAAA TCGGCCTGCA CCTCGGAGCG CCTGCCGGTG CCGACCTCGA GCGTGTTCTG CCGCTGATCT TCGAGCGTTT CGGGCGTGTC CTGGATGAAT TCAACCCGCT CGCGGTGCTG ACCCTGGGTG ACGGTGATGC CCTGCTGGCC AGCGCCCTGT GCGCCCGACG TCGGCATGTC CCGTTGATCC GTGTCGAGGC CGGGCTGCAC CATGCCAGCG CCCGGCCGTC GATCAATGGC GCCTTGCTCG ACCAGATCGC CGACCTGCTG TTTGCCAGCG CCCGACCGGG TGTCCTGCGT GGCCTGCAGC GCCAAGGCAT CGCCGCCGAG CGTGTCTACA GCATCCCGGG CCTGCTGCAG GTCGATGCCC TGGCCGCGGT GTGGAAGGAA GTCAGCACCG CCTATGGCGC CTTCATGCGC CACGGGCTGC CGATCTACCT CGGGCCGACC TGGTCGGAGC ATGCCGGAGC CGGCACGCCG TACGTGCTGT GCGGGCTGAC CTTCGATCCG AACGATCCGG CCGCGATCGC CGACGCCGTG TCGACCGTGC TGTCCCTGCC GCAGACCGAC AAGGTGGTCT GGATCCTCGA CCGCTGCGCG ACGCCTGCCT TGCGCCTGCT GCTGGCCGAT CGCCCCGAAC TGGCCGGGCC GGTGGTGCTG GTCGAGGGCG ACGGTCCGCG TGGTGCCGAG ATGCGCGAGC AGATGGACCA GGCGCGTGTG CTGTGCCGTG AAGTCGATGT GCTGCCCGAT CAGCTGAGCA TGCTGCGCGG TGCCAGTTGG GCGCTGCTCG AGCCGGGCCA GGTGCTGGTG GATGCGGCCG ATCTGCTGAA CGTGCCGACG CTGCTGGACA TCAACGGCCG TCTCGTCCCT GCCGACGCCA TCGCAGGCAT GGTGAGCGAC GGGGATGACC ACGGTGCCGA CCCGCGCGAC GCCGTTTCAG CCTGGATCGC CGGCATCGAA CCCGGGACGG TGCGCGAGTC GCTTGCTGAC GGGGGTGGCG CGGTCGAGGT CCTGCAGACC CATCTGTGCG GCTGGATCGG CCGGCAGCAG GCGGCCGTGC CCGCGCCGGT CGCGGTCGCC GCCTGA
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Protein sequence | MYESYFGFHG QPFQLNPDPA FFFNSRGHGR ALAYLQYGVT QSEGFIVITG EIGAGKTTLV RMLLEGLDRQ KVLPAQIVST QLESGELLQA IITAFGIPSQ GTSKAHLIAT LEAFLTALAA QGRHALLIVD EAQNLDPRAV EELRMLSNFQ LGNKALLQSF LVGQPELRRL LESPSMEQLR QRVTASYHLG PLGIEETQGY VQHRLKHVGW SGRPSFDEGA FDSLFRWTGG VPRRINRLCN RVLLASFLDG TDVVNEALVE RTALELREEI GESDFTPSVV PQRAPAAPVV APRTVEPEPI AAPAVDPQPE SVAVPEEAAA ADSTLADMAV EAAELATLTD ADPLLVEPVG DDLLEDVDAL LAVSARQLAV IAARVQADSA LDLESVAKRV MLEQPVAPLP AIAVERTQRA GMPPRSGVVL CVADTASAAL KFAALAKRMA EQAGAARMVL VNPGVKATVW PWEQMERLLP SLEIGLHLGA PAGADLERVL PLIFERFGRV LDEFNPLAVL TLGDGDALLA SALCARRRHV PLIRVEAGLH HASARPSING ALLDQIADLL FASARPGVLR GLQRQGIAAE RVYSIPGLLQ VDALAAVWKE VSTAYGAFMR HGLPIYLGPT WSEHAGAGTP YVLCGLTFDP NDPAAIADAV STVLSLPQTD KVVWILDRCA TPALRLLLAD RPELAGPVVL VEGDGPRGAE MREQMDQARV LCREVDVLPD QLSMLRGASW ALLEPGQVLV DAADLLNVPT LLDINGRLVP ADAIAGMVSD GDDHGADPRD AVSAWIAGIE PGTVRESLAD GGGAVEVLQT HLCGWIGRQQ AAVPAPVAVA A
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