Gene Lcho_3505 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3505 
Symbol 
ID6160952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3916740 
End bp3919235 
Gene Length2496 bp 
Protein Length831 aa 
Translation table11 
GC content68% 
IMG OID641666278 
Productsecretion ATPase 
Protein accessionYP_001792524 
Protein GI171060175 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3267] Type II secretory pathway, component ExeA (predicted ATPase) 
TIGRFAM ID[TIGR03015] putative secretion ATPase, PEP-CTERM locus subfamily 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000001058 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTACGAGT CCTACTTCGG TTTCCACGGG CAACCGTTTC AGCTCAATCC CGATCCGGCG 
TTCTTCTTCA ACAGCCGGGG TCACGGTCGG GCGCTCGCTT ATCTGCAGTA CGGCGTCACC
CAGTCGGAGG GCTTCATCGT CATCACCGGC GAGATCGGTG CCGGCAAGAC GACCCTGGTC
CGCATGCTGC TCGAGGGGCT CGACCGCCAG AAGGTCCTGC CTGCCCAGAT CGTTAGCACG
CAGCTCGAGT CCGGGGAGTT GCTGCAGGCC ATCATCACCG CGTTCGGCAT CCCGTCGCAG
GGGACATCGA AGGCGCACCT GATCGCCACG CTCGAAGCCT TCCTGACCGC GCTGGCCGCA
CAGGGCCGGC ATGCCTTGCT GATCGTCGAC GAGGCCCAGA ATCTGGATCC ACGCGCGGTC
GAGGAGCTGC GCATGCTGTC GAACTTCCAG CTCGGCAACA AGGCGCTGCT GCAGAGTTTC
CTGGTCGGCC AGCCCGAGTT GCGCCGCCTG CTCGAATCGC CGTCGATGGA GCAGTTGCGC
CAGCGTGTCA CGGCCTCCTA TCACCTCGGG CCGCTCGGCA TCGAAGAAAC ACAAGGCTAT
GTTCAGCACC GCCTCAAGCA CGTGGGCTGG AGTGGCCGGC CCTCGTTCGA CGAGGGTGCT
TTCGACAGCC TCTTCCGCTG GACGGGGGGC GTGCCGCGCC GCATCAACCG GCTGTGCAAC
CGTGTCCTCC TGGCCAGCTT TCTGGATGGC ACCGATGTCG TGAACGAGGC GCTGGTCGAA
CGCACGGCAC TTGAACTGCG CGAGGAAATC GGCGAATCCG ACTTCACGCC GTCGGTCGTT
CCGCAGCGTG CGCCTGCCGC GCCGGTCGTT GCACCACGGA CCGTCGAGCC TGAACCGATT
GCCGCGCCGG CTGTCGATCC GCAGCCCGAG TCGGTAGCCG TGCCCGAGGA GGCCGCTGCT
GCCGATTCGA CACTCGCCGA CATGGCTGTC GAGGCAGCCG AGCTGGCGAC GTTGACCGAC
GCGGATCCCC TGCTGGTCGA ACCGGTCGGC GACGATCTGC TCGAAGATGT CGACGCCTTG
CTGGCGGTTT CGGCGCGTCA GCTGGCGGTG ATCGCCGCAC GGGTCCAGGC CGATTCCGCG
CTGGATCTCG AATCGGTCGC GAAGCGGGTG ATGCTGGAAC AGCCGGTCGC GCCGCTGCCC
GCCATCGCGG TCGAGCGCAC CCAGAGAGCC GGGATGCCGC CTCGATCCGG CGTGGTTCTT
TGTGTCGCCG ACACGGCCAG CGCGGCGCTC AAGTTCGCGG CCCTGGCCAA GCGCATGGCC
GAGCAGGCCG GCGCTGCGCG CATGGTGCTG GTCAATCCGG GTGTCAAGGC GACGGTCTGG
CCCTGGGAGC AGATGGAGCG TCTGCTGCCG TCACTTGAAA TCGGCCTGCA CCTCGGAGCG
CCTGCCGGTG CCGACCTCGA GCGTGTTCTG CCGCTGATCT TCGAGCGTTT CGGGCGTGTC
CTGGATGAAT TCAACCCGCT CGCGGTGCTG ACCCTGGGTG ACGGTGATGC CCTGCTGGCC
AGCGCCCTGT GCGCCCGACG TCGGCATGTC CCGTTGATCC GTGTCGAGGC CGGGCTGCAC
CATGCCAGCG CCCGGCCGTC GATCAATGGC GCCTTGCTCG ACCAGATCGC CGACCTGCTG
TTTGCCAGCG CCCGACCGGG TGTCCTGCGT GGCCTGCAGC GCCAAGGCAT CGCCGCCGAG
CGTGTCTACA GCATCCCGGG CCTGCTGCAG GTCGATGCCC TGGCCGCGGT GTGGAAGGAA
GTCAGCACCG CCTATGGCGC CTTCATGCGC CACGGGCTGC CGATCTACCT CGGGCCGACC
TGGTCGGAGC ATGCCGGAGC CGGCACGCCG TACGTGCTGT GCGGGCTGAC CTTCGATCCG
AACGATCCGG CCGCGATCGC CGACGCCGTG TCGACCGTGC TGTCCCTGCC GCAGACCGAC
AAGGTGGTCT GGATCCTCGA CCGCTGCGCG ACGCCTGCCT TGCGCCTGCT GCTGGCCGAT
CGCCCCGAAC TGGCCGGGCC GGTGGTGCTG GTCGAGGGCG ACGGTCCGCG TGGTGCCGAG
ATGCGCGAGC AGATGGACCA GGCGCGTGTG CTGTGCCGTG AAGTCGATGT GCTGCCCGAT
CAGCTGAGCA TGCTGCGCGG TGCCAGTTGG GCGCTGCTCG AGCCGGGCCA GGTGCTGGTG
GATGCGGCCG ATCTGCTGAA CGTGCCGACG CTGCTGGACA TCAACGGCCG TCTCGTCCCT
GCCGACGCCA TCGCAGGCAT GGTGAGCGAC GGGGATGACC ACGGTGCCGA CCCGCGCGAC
GCCGTTTCAG CCTGGATCGC CGGCATCGAA CCCGGGACGG TGCGCGAGTC GCTTGCTGAC
GGGGGTGGCG CGGTCGAGGT CCTGCAGACC CATCTGTGCG GCTGGATCGG CCGGCAGCAG
GCGGCCGTGC CCGCGCCGGT CGCGGTCGCC GCCTGA
 
Protein sequence
MYESYFGFHG QPFQLNPDPA FFFNSRGHGR ALAYLQYGVT QSEGFIVITG EIGAGKTTLV 
RMLLEGLDRQ KVLPAQIVST QLESGELLQA IITAFGIPSQ GTSKAHLIAT LEAFLTALAA
QGRHALLIVD EAQNLDPRAV EELRMLSNFQ LGNKALLQSF LVGQPELRRL LESPSMEQLR
QRVTASYHLG PLGIEETQGY VQHRLKHVGW SGRPSFDEGA FDSLFRWTGG VPRRINRLCN
RVLLASFLDG TDVVNEALVE RTALELREEI GESDFTPSVV PQRAPAAPVV APRTVEPEPI
AAPAVDPQPE SVAVPEEAAA ADSTLADMAV EAAELATLTD ADPLLVEPVG DDLLEDVDAL
LAVSARQLAV IAARVQADSA LDLESVAKRV MLEQPVAPLP AIAVERTQRA GMPPRSGVVL
CVADTASAAL KFAALAKRMA EQAGAARMVL VNPGVKATVW PWEQMERLLP SLEIGLHLGA
PAGADLERVL PLIFERFGRV LDEFNPLAVL TLGDGDALLA SALCARRRHV PLIRVEAGLH
HASARPSING ALLDQIADLL FASARPGVLR GLQRQGIAAE RVYSIPGLLQ VDALAAVWKE
VSTAYGAFMR HGLPIYLGPT WSEHAGAGTP YVLCGLTFDP NDPAAIADAV STVLSLPQTD
KVVWILDRCA TPALRLLLAD RPELAGPVVL VEGDGPRGAE MREQMDQARV LCREVDVLPD
QLSMLRGASW ALLEPGQVLV DAADLLNVPT LLDINGRLVP ADAIAGMVSD GDDHGADPRD
AVSAWIAGIE PGTVRESLAD GGGAVEVLQT HLCGWIGRQQ AAVPAPVAVA A