Gene Lcho_3503 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3503 
Symbol 
ID6160950 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3914880 
End bp3915542 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content69% 
IMG OID641666276 
Productmethyltransferase 
Protein accessionYP_001792522 
Protein GI171060173 
COG category[L] Replication, recombination and repair 
COG ID[COG0742] N6-adenine-specific methylase 
TIGRFAM ID[TIGR00095] RNA methyltransferase, RsmD family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0000000923183 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCAATC CGCGTTCTCG ACGTTCCGAC CCCAGCCCGG CGCCACGCAC GGCTGCCCCA 
TCCGCCGGCG AGGTGCGCCT GATCGGCGGG CGCTGGAAGC GCAGCAAGTT GCGTTTCACG 
GCCCGGCCCG GCCTGCGCCC CACGCCCGAC CGGGTGCGCG AGACGCTGTT CAACTGGCTC 
GGCCAGTCGC TCGACGGCTG GAGCGTGCTC GACGCCTTCG CCGGCAGCGG CGCGCTCGGC 
TTCGAGGCGG CTTCGCGTGG TGCGAGCCGG GTTCGCATGC TGGAACTCGA TGCCGTGCTG 
GTCCATGAAC TGCAGGCCAC GCGCGACCGC CTGGGTGCCG ACACGGTGGA CGTGCTGCGC 
ACCGATGCGC TGGCCTGGAT GGGCGAGCAG AAGGAGGCGA GCTTCGACCT CATCCTGCTC 
GACCCGCCTT TTTCGCTCGA TCTCTTTGCC GCTGCACTCG CGCAGGCCGT GCACCTGCTG 
CGGCCGGATG GCTGGATCTA CCTCGAGGCC GACCGCGCAT TCGGCGAGGA AGCGCTGGCC 
GGGATGGGGC TGCGCATTCG CCGCATCGGC TGCGCCGGCA TGGTGCACTT CCACCTGCTG 
GAGCGGCTTG CGATGTCAGT GAACGATTAC ACTGATCCGC CCCTGTCCCT TCCAACCGAC 
TGA
 
Protein sequence
MSNPRSRRSD PSPAPRTAAP SAGEVRLIGG RWKRSKLRFT ARPGLRPTPD RVRETLFNWL 
GQSLDGWSVL DAFAGSGALG FEAASRGASR VRMLELDAVL VHELQATRDR LGADTVDVLR 
TDALAWMGEQ KEASFDLILL DPPFSLDLFA AALAQAVHLL RPDGWIYLEA DRAFGEEALA 
GMGLRIRRIG CAGMVHFHLL ERLAMSVNDY TDPPLSLPTD