Gene Lcho_3498 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3498 
Symbol 
ID6159982 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp3911601 
End bp3912563 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content64% 
IMG OID641666271 
Productribose-phosphate pyrophosphokinase 
Protein accessionYP_001792517 
Protein GI171060168 
COG category[E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism 
COG ID[COG0462] Phosphoribosylpyrophosphate synthetase 
TIGRFAM ID[TIGR01251] ribose-phosphate pyrophosphokinase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones8 
Fosmid unclonability p-value0.00000000549461 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCTCGCCG ACACCGTTCT CTTCACCTGC AACGCCAACC CGGCGCTCGC CCAGGAAATT 
GCCTCCGACC TGCACATCGA ACTGGGTAAA GCCAGCATCG GTCGTTTCTC GGATGGCGAA 
GTCACCATCG AAATCCAGCA GAACGTGCGT GCACGTGATG TCTTTGTGGT CCAGCCGACC 
TGCGCGCCGA CCAACGAGCA CATCATGGAG CTGCTGCTGA TGGTCGACGC CCTCAAGCGC 
GCTTCGGCCG GGCGCATCAC GGCCGTGATG CCCTATTTCG GCTATGCACG CCAGGATCGC 
CGGCCGCGCT CGACGCGGGT GCCGATCAGC GCCAAGGTCG TGGCCAACAT GCTCGAGGCC 
GCTGGCGTCA ACCGCGTGTT GACGATGGAC CTGCACGCCG ACCAGATCCA GGGCTTCTTC 
GACATCCCGG TCGACAACAT CTACGCCTCG CCGGTGCTGC TGTCGGATCT CAAGTCCAAG 
AGCTACGAGA ACCTGGTGGT GGTGTCGCCC GACGTCGGTG GCGTGGTGCG CGCACGCGCG 
CTGGCCAAGC AGCTCGGCTG TGATCTGGCC ATCATTGACA AGCGCCGCCC CAAAGCCAAC 
GTGTCCGAGG TGATGCACAT CATCGGCGAC ATCGACGGCC GCAACTGCGT GATCATGGAC 
GACATGATCG ACACCGCCGG CACGCTGGTG AAGGCCGCCG AGGTGCTCAA GGAGCGCGGC 
GCCAAGAGCG TGTACGCCTA TTGCACGCAC CCGGTGTTCT CGGGCCCGGC GCTCGACCGC 
ATCGAGAGCT CGCATCTCGA CGAAGTCGTC ATCACGAACA CCATCCCCCT GCGCGGCACG 
GCCAGGCAGT CCAAGAAGAT CCGCCAGCTG TCGGTGGCCT TCCTGTTCGC CGAGACCATC 
CGCCGCATCT CGGATGGCGA ATCGGTGACG TCGCTGTTCG CCGAACAGAA CAACAATTTC 
TGA
 
Protein sequence
MLADTVLFTC NANPALAQEI ASDLHIELGK ASIGRFSDGE VTIEIQQNVR ARDVFVVQPT 
CAPTNEHIME LLLMVDALKR ASAGRITAVM PYFGYARQDR RPRSTRVPIS AKVVANMLEA 
AGVNRVLTMD LHADQIQGFF DIPVDNIYAS PVLLSDLKSK SYENLVVVSP DVGGVVRARA 
LAKQLGCDLA IIDKRRPKAN VSEVMHIIGD IDGRNCVIMD DMIDTAGTLV KAAEVLKERG 
AKSVYAYCTH PVFSGPALDR IESSHLDEVV ITNTIPLRGT ARQSKKIRQL SVAFLFAETI 
RRISDGESVT SLFAEQNNNF