| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3495 |
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| Symbol | |
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| ID | 6160010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3907994 |
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| End bp | 3909856 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666267 |
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| Product | tetratricopeptide TPR_4 |
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| Protein accession | YP_001792514 |
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| Protein GI | 171060165 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0000000742446 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCCTGT CTGTCAGCCC GTCCTGCACG GCCCCATCGA ATCGCCACAT CGGGCCGCCG
CACCAGTCGG GCATCGACAA GACGGGTTTG CCACGCTGGC TCGCCAGCGC GTCGATCGTG
CTGGCGGTGC TCGCCACGCC GGCCTGCGCG CAGGTTCGGC CGGCCACCGG GCCGCAGGCC
ACCGTGAACA ACTCGGCGCT CGACGCCGAG ACGTTCTACC AGCTCTTCAT CAGCGAACTC
GAATTGCGCC GCGGCGAGCC CGGCATCGCC TACCAGGTGA TGCTCGACGC GGCGCGGCGC
ACCCGCGACG ACCGGCTGTA CAAGCGCGCG GTCGACATGG CCATCGGGGG CCGCGCGCCC
GAGCAGGCGC TGGCCGCGCT CAAGCAGTGG CGCCAGACGC TGCCCAAGTC GCGCATGGCG
GCCGAGTTGC AGGCGCAGGT GCTGATGGCG CTGGGCCGGC CGCAGGACGC CCGCGAGCCG
ATGCGCGCGC TGATCGAACT CACGCCGGCG GCCGACCGCG CACGCACGAT CTCGGCCCTG
GCCGGGCTGG TCGTGCGCGG CGACAAGGCC GCCGCCGCGG CCGGTGCGGT CGACGAAGTC
CTCAAGCCCT GGAAGGATCA GGGTGCGACC CGCGCCAGCG CCCTGCTCGC GTCATCGCGC
GCCTGGCTGG CGGCAGCCGA CAACGGCCGG GCCCTGACGC TGGCGCAGGA GGCGCAGCGC
GTGGAGCCGG GCGCCGAAAC CGCCGCGCTG GTCGGCCTGG AGCTGTTCGG CCAGGACCCG
CGTGCCGAAC AGCTGGTGCA GGCCTACGTG AAGACGCCAC AAGCCAGCGC GCCCCTGCGG
CTGATCCATG CCCGCCGCCT GACCGCCGCG CAGCGCTACC CCGAGGCGCT GGCCACCGCC
CAGGCCATCA TCGCCAAGGA ACCCGAATTC GCGCCCGCCT GGCTGATGCA GGGCGCGCTG
CAGATCGAGC TGGCACAGAC CGAGGCCGCG CGTGGATCGC TGACGCGATT TCTGGAACTG
AAGGACAAGG CGGTCGCTGC CGACGATGAC GAGGACGTCG AGGAAACTGC CGCGACCCAT
CAGGCCGGTG ACGAGCAGGA ACGCAATCAG GCCTACCTGA TGCTCGCGCA GGCAAGCGAA
CAGCTGAAAG ACTATGCCGC CGCGCAGCAG TGGCTCGAAC GGCTCGGCAA CAACCCGAGT
TCGTCCGCGG TGGTGCTGCG GCGCGCCTCC CTGCTGGCGC GCCAGGGCAA GCTCGACGAC
GCACGCGCAC TGGTTCGCGC CCTGCCCGAG CAGACCGCCG ACGACAGGCG CGCCAAGGTC
ATGGGCGAGA CCCAGCTCCT GCGTGACGCC AGGCAATGGC AGGCCGCCTA CGAGGTGCTG
GTGGCCGCCA ACGGCGCACT GCCCGACGAT CCGGACCTGC TCTACGAACA GGCCTTGCTG
GCGGAAAAGC TGCTGCGTTT CGACGAGATG GAGCAGCTGC TGCGCCGGGT GATCGCCATC
AAGCCGGATC AGCAGCATGC GTACAACGCC CTGGGCTACA GCCTGGCCGA TCGGGGCCTG
CGCCTTGCCG AGGCGCGCCA GCTCGTAGCC AAGGCGCTGG AGCTGGCGCC CGGCGATCCG
TTCATCACCG ACAGCCTGGG CTGGATCGAG TTCCGCATGG GGCGCGTGCA GGAAGCGTTG
GTGCTGCTGC GGGGCGCCTA TGGCCAGCGG CCCGACGTGG AGATCGGCGC GCATCTGGGC
GAGGTGCTCT GGTCGCTGGG CCAGCACGAC GAGGCACGCC AGATCTGGCG CGCCGGCCAG
GAACGTGACG CCAACAACGA GGTGCTCGCC GAAACCCTGG CGCGGCTCAA GGTCCGGCTG
TGA
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| Protein sequence | MRLSVSPSCT APSNRHIGPP HQSGIDKTGL PRWLASASIV LAVLATPACA QVRPATGPQA
TVNNSALDAE TFYQLFISEL ELRRGEPGIA YQVMLDAARR TRDDRLYKRA VDMAIGGRAP
EQALAALKQW RQTLPKSRMA AELQAQVLMA LGRPQDAREP MRALIELTPA ADRARTISAL
AGLVVRGDKA AAAAGAVDEV LKPWKDQGAT RASALLASSR AWLAAADNGR ALTLAQEAQR
VEPGAETAAL VGLELFGQDP RAEQLVQAYV KTPQASAPLR LIHARRLTAA QRYPEALATA
QAIIAKEPEF APAWLMQGAL QIELAQTEAA RGSLTRFLEL KDKAVAADDD EDVEETAATH
QAGDEQERNQ AYLMLAQASE QLKDYAAAQQ WLERLGNNPS SSAVVLRRAS LLARQGKLDD
ARALVRALPE QTADDRRAKV MGETQLLRDA RQWQAAYEVL VAANGALPDD PDLLYEQALL
AEKLLRFDEM EQLLRRVIAI KPDQQHAYNA LGYSLADRGL RLAEARQLVA KALELAPGDP
FITDSLGWIE FRMGRVQEAL VLLRGAYGQR PDVEIGAHLG EVLWSLGQHD EARQIWRAGQ
ERDANNEVLA ETLARLKVRL
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