Gene Lcho_3486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3486 
Symbol 
ID6160092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3897635 
End bp3898300 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content76% 
IMG OID641666258 
ProductCBS domain-containing protein 
Protein accessionYP_001792505 
Protein GI171060156 
COG category[T] Signal transduction mechanisms 
COG ID[COG3448] CBS-domain-containing membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.000172668 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTCTACG TCCACGGCAT CGGTGGCCGC ATGTACGCCG CCACGCTCGA GCAACTGCGC 
CAGGTCGCGC CGACGACGGC GGTGGCGCGC CCGCGCCGCA TCGCCACGCT GGGCCGCGAG 
CCCGATGACG CACCGGATCG CCCGCAGTCG CCCCTGTCCA CGCCCGCCGA CACCGGCCAC 
CGCGCCGCCC TGGCGGCCTA CGCCGATGCC GGGCAGGCCC TGCAGCCGCG CCAGTCGCTG 
CGTTGCGTGG CCGACGTGAT GAGCCGGCGC GTGCTGTCGG TGGCGGCCGA TGCCAGCGTG 
CTGCAGGCCT GGCAGCAGCT CGCCCGCGAA GGCATCGGCC AGGCGCCGGT GCTCGACACC 
GACGCCCGCC TGGTCGGGCT GTTGCTGCGC GCCGAACTGA TGCGTGGCGA CTCCCTCGAG 
CGTGCCGCCA CCGACCCGCC GGCCTGGCGG GCCTGGCTGG CCCAGCCGGT GCGCGCCGTG 
ATGTGGACGC CCGTGCCGGC GGCATCGCCC GACACCGATC TGCGCCGCCT GGCCGCTGCC 
CTGCTCGGCA CCGGCCTGCC GGGCCTGCCG GTCAGCGACG CGCAGGGCGG GCTGATCGGC 
TTCGTGTCGC GCTCGGACAT CCTGCGCGCC GTCACCGCCG ATCCGCCGCT GGACCTGTGG 
GGCTGA
 
Protein sequence
MFYVHGIGGR MYAATLEQLR QVAPTTAVAR PRRIATLGRE PDDAPDRPQS PLSTPADTGH 
RAALAAYADA GQALQPRQSL RCVADVMSRR VLSVAADASV LQAWQQLARE GIGQAPVLDT 
DARLVGLLLR AELMRGDSLE RAATDPPAWR AWLAQPVRAV MWTPVPAASP DTDLRRLAAA 
LLGTGLPGLP VSDAQGGLIG FVSRSDILRA VTADPPLDLW G