| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3484 |
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| Symbol | |
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| ID | 6160090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3894380 |
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| End bp | 3895453 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641666256 |
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| Product | porin |
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| Protein accession | YP_001792503 |
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| Protein GI | 171060154 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000221125 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGATCA ATACCCGCAA GAACATTTTC TCGATCGCCG CCTTGCTGGC CCTCGTCGGC
GCTGCGGCGC CGATGGCCGC TTCGGCCCAG TCGACCGAAT TCACCTGGTA CGGCCGCATC
GACCTCGGCC TGGAAAGCAC CAGCGACGGC GATGTCTCGC GCATCATGGC CAGCAACTTC
GCCTCGCGCC TGGGCATCAA GGGCGAGCAC AAGTTCAACC CCGCCCTGAG CGCCATCTTC
CAGGTCGAGA CCGGCGTCGC CCCTGACGAC ACCGCCAACA GCAAGGCCTT CGCCAACCGC
AACAGCTTCG TCGGCCTGAA GTCCGCCAAC GCCGGCACCG TGCTGGTCGG CACCTACGAC
ATGCCGCTCA AGACCCTGGA AGGCACCTCC GGCGGCCTGT GGGGCCAGGG CGACCTGCTC
GAGATCCTGG TGCACGGCAA GGGCAGCCGC GTCGCCATCG GCAACGCCAA CTTCCAGAAC
GTGCACACCC GCAAGACCAA CGTGCTGCAC TACGCCAGCC CGAAGTTCGC CAACGCGATC
GTCGCCAAGG TGGCCTACTC GCCTGACGAG GCCAAGACCA CGGTCCTGAA CAAGGCGGTG
TTCGGCGCCT CGGTCGAGTA CAACGACGGC ATGTTCAACG GCGGCGTCGC CATCGAGAAC
CAGAAGGACG CCATCGCCGC CGGCAAGGCG ATGAAGGCCA CCAAGGTCAC GCTGGGCACG
GCCCTGAGCG ACTTCACCGT GGGCGTCGCC TTCAGCAAGC TCGACAACAG CAACGGCAAG
GAAACCAGCA ACGCCGTCAT CACCGGCGCC TACAAGCTGG ACTCGGCCCT CACCCTGAAG
GCCAGCCTGG GCAAGTCGGG CGAGTCGAGC ACCGGCGCCA ACGACGGCAT CAAGGGCATG
GCCTTCGAAG CCAACTACGC CATCGACAAG CAAGTCGCCG TCTACGGCTA CTTCACCAAG
CTGACCAACG ACTCGGCCGC TCGCGGCACC CTGGTCAGTT CGGACAACTT CCCGAGCGTC
GTCGCCGGCA AGGACCCGCG CGCCCTGGGC GCGGGCGTGC GCTACTCGTT CTGA
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| Protein sequence | MQINTRKNIF SIAALLALVG AAAPMAASAQ STEFTWYGRI DLGLESTSDG DVSRIMASNF
ASRLGIKGEH KFNPALSAIF QVETGVAPDD TANSKAFANR NSFVGLKSAN AGTVLVGTYD
MPLKTLEGTS GGLWGQGDLL EILVHGKGSR VAIGNANFQN VHTRKTNVLH YASPKFANAI
VAKVAYSPDE AKTTVLNKAV FGASVEYNDG MFNGGVAIEN QKDAIAAGKA MKATKVTLGT
ALSDFTVGVA FSKLDNSNGK ETSNAVITGA YKLDSALTLK ASLGKSGESS TGANDGIKGM
AFEANYAIDK QVAVYGYFTK LTNDSAARGT LVSSDNFPSV VAGKDPRALG AGVRYSF
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