| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3477 |
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| Symbol | |
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| ID | 6159787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3888921 |
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| End bp | 3890816 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666251 |
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| Product | hypothetical protein |
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| Protein accession | YP_001792498 |
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| Protein GI | 171060149 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG5519] Superfamily II helicase and inactivated derivatives |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00832403 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATGACG ACCTGAACAC CGCGGCCGGC GACCTCGATC ACCTGGCACG AGTGGCCGCT
GGCGAAGCCG GTGAAGTCGA GCAGGTGCAC GCCGAAGTGA CCGAACTGGC CGCAGTCCGC
AAGGCCCGGC GCAAGAGCAC CCAGGCGACC GCCCCCACCA AGCCCAGGCG CAGCGGGCAC
GGCGCAGGCG CGCAGTTCCT GATTCTCGAC GGCAGCGAGG GCCAAGGATC GGCCGGCGTG
TACTTCGTCG GCCGCGATGC CGAGGGCAAC GAGAAGGCGC CGCTGTGGGT CTGCGCGCCG
CTGCACATCC TGGCCAAGAC CCGGGGCGCC AAACAAGCCG ACTGGGGCCG CCTGCTGGAC
TGGCACGACG CAGACGGACA CCCGCACCGC TGGGCCGTGC CCGATGAGCT GCTCAGTGGC
GACGGCCTGG ACGTGCGCCG CGAGCTGATG CGTCAGGGGC TGGCCATCTC GCCGAACCGG
GCCGCGCGCG AGATGCTGTC GACCTATCTG CAGGTCTGGC CGGTCGACGC CCGCGCGCGA
TGCGTGGAGC GGCTGGGCTG GGCCGGGCCG GTGTTCGTGC TGCCCAATGA GGCCATCGGC
GCTGATGCCG AGTTGGTGGT GTTCCAGAGC GCCAGCGCCA TCGAGCCCGC ATTCAGCAGC
GCCGGTACCG TCGACGACTG GCGCGCCCAG GCCGCCGCGC TGGCTGCAGG CAACAGCCGC
ATGGTGTTCG CCATCTGCTG CGCGCTGGCG CCGCCGCTGG CCAGCCTGGC GGGCGAGGAT
TCGGGCGGCT TCCACCTGCG CGGCAAGAGC AGTTCGGGCA AGTCGACCGC GCTGGCGCTG
GCCGCATCGG TGTGGGGCTC GCCCGCGACC TTCCCGCGGC TGTGGCGCAC CACCACCAAC
GGACTCGAAG GGCTGGCGAC GATGCACAAC GACGTGTTGC TGATCCTCGA CGAGCTGAGC
CAGTGCGACC CCAAGGACGC GGGCGACGCC GCCTATCTGC TGGCCAACGG GCAGGGCAAG
ACGCGTGCGA GCCGCGCCGG CATGGCGAGG CAGGCTGCGC GCTGGCGCCT GCTGTTCCTG
TCGGCCGGGG AAGAGAGCCT GTCGGCCATG ATGACCCGCG CCGACAAGCG GGCGAACGCG
GGGCAGGAAA TCCGCCTGGC CGACATCGAG GCCGACGCGG GCGCCGGGCT GGGTGCGTTC
GACACCTTGC ACGGGCACCC GAGCGGCGCG GCGCTGTCGC TGGCGCTGAA GGATGCGGTG
CAACAGCAGC ACGGCGCCGT CGGCGTCGCC TGGCTGCGGC TGGTGGTGCG GGATCGCCTG
AAGCTGGCCG ATGAAGTGAC GGCGCTGGTG CGCGAGTTCG TGGACGCCTA CACCGAGCCC
GGCTCCAGCG GGCAGGTGAT CCGGGTGGCG CGGCGCTTCG GCCTGGTCGC GGCTGCCGGC
GAACTGGCCA CGGACTACGA CCTGACCGGC TGGCGAGGGG GCGAGGCGTT CGACGCCGTG
GGGCAGTGCT TCACGTCTTG GCTGGCCGGG TTCGGTGGCG CGGGAAACCG CGAAGACCGG
GCGCTGTTGA CACAGGTGCG GGCGTTCTTC GAGGTGCACG GCGCCAGCCG CTTCGAGAGC
ATGGAAGCCA CCGTTGAACA GCGTGTCGCC AACCGGGCCG GCTTCTGGCG CGACGGGGAG
GACACCGGCC GGCAGTTCCT GGTGCTGCCC GAGGTGTTCA AGCGCGAGCT GTGCGCGGGG
TTCGATCCGA AGGCCGCGGC GAAGGCGCTG ATCGAGGCGG GTGTGATCCT GGCCGGCAAG
GACGGGAAGG CCAGCCGCAG CGAGCGATTG CCCGGCATCG GCGCCACGTC GCGGGTGTAC
GTGTTCGGGT CGAAGCTGTG GGCGTGCGAG GAATGA
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| Protein sequence | MNDDLNTAAG DLDHLARVAA GEAGEVEQVH AEVTELAAVR KARRKSTQAT APTKPRRSGH
GAGAQFLILD GSEGQGSAGV YFVGRDAEGN EKAPLWVCAP LHILAKTRGA KQADWGRLLD
WHDADGHPHR WAVPDELLSG DGLDVRRELM RQGLAISPNR AAREMLSTYL QVWPVDARAR
CVERLGWAGP VFVLPNEAIG ADAELVVFQS ASAIEPAFSS AGTVDDWRAQ AAALAAGNSR
MVFAICCALA PPLASLAGED SGGFHLRGKS SSGKSTALAL AASVWGSPAT FPRLWRTTTN
GLEGLATMHN DVLLILDELS QCDPKDAGDA AYLLANGQGK TRASRAGMAR QAARWRLLFL
SAGEESLSAM MTRADKRANA GQEIRLADIE ADAGAGLGAF DTLHGHPSGA ALSLALKDAV
QQQHGAVGVA WLRLVVRDRL KLADEVTALV REFVDAYTEP GSSGQVIRVA RRFGLVAAAG
ELATDYDLTG WRGGEAFDAV GQCFTSWLAG FGGAGNREDR ALLTQVRAFF EVHGASRFES
MEATVEQRVA NRAGFWRDGE DTGRQFLVLP EVFKRELCAG FDPKAAAKAL IEAGVILAGK
DGKASRSERL PGIGATSRVY VFGSKLWACE E
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