| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3468 |
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| Symbol | |
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| ID | 6159784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3880425 |
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| End bp | 3882662 |
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| Gene Length | 2238 bp |
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| Protein Length | 745 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666241 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001792489 |
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| Protein GI | 171060140 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0436703 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGGC GCGTGCGCTC GCAGCCGGGT GCGTCGCGCC AGGGCCCGGA CCTGCCGGCC
GCTGCCGCTG CCGCGACGCC CGTCGCGACC GAGGCCGAAC GCCGCGCCGA AGCGATGGCC
CACGAGCTGC AGGTGCACCG CATCGAGCTC GAGATGCAGA ACGACGAGCT GCGCCGCGCC
CAGATCGCGC TGGAGACGGC GCGCGACCGC TACATCGACC TGTACGACTT TGCGCCGGTG
GGCTATTTCA CGCTCGACAC CAACGGCCTG ATCACCGAGG CCAACCTGAC CGGCGCCGAC
CTGCTGGGCG AAGCCCGCGC CAAGCTGGTG GGGCGGCGCT TCGAGCGCTA CATCGCGCCG
GTCGACCGCG ACCGCTGGCA TCGCCACGCC CTGAGCCTGT CGCGGCGCGG CGAACCCGGC
CGCATCGAAC TGCTGGTGCA GGGCGCGGGC GGGCGCAGCA TCCACGCCCA GCTCGACGGC
CTGATGGCCC GCGCGAACCA CGACGCGCCG CTGCTGCGCA TCGCGCTCAC CGACATCAGC
GAGCGCAAGC ACGCCGAGTC GGAACTGCGC CTGGCCGCCA CCGCGTTCGA GGCCCAGGAA
GGCATGATGA TCACCGACGC GCACGGCGTG ATCGAGCGCG TCAACAAGGC CTTCACGCAG
ATGACCGGCT ACAGCGCCGC CGAAGCGATC GGCCAGACCG CCAGGCTGCT GCACTCGGGC
CGGCACGACC CGGCCTTCTA CGCTGCCATG TGGGACAGCC TGCAGCGCAC CGGCACCTGG
CAGGGCGAGG TCTGGAACCG GCGCAAGTGC GGCGAGGTGT ATGCCGAGTG GCTCACCATC
ACCGCCGTGC AGGACGAGCA CCGCACCGTG ACGCGCTACG TCGGCACCAT GCTCGACATC
TCGCAGCGCA AGGCGCGCGA GGAAGAGATC GCCCAGCTGG CCTTCTACGA CCCGCTGACC
GGCCTGCCCA ACCGGCGCCT GCTGAAAGAT CGGCTGAACC AGGCGATGGC CATCAGCGCG
CGCTCGCAGC GCGAGGGCGC GCTGCTCTTC ATCGACCTCG ACCACTTCAA GGACATCAAC
GACACCCGCG GCCACGACAA GGGCGACCTG CTGCTGCAGA ACGTCGCGCA GCGCCTGAGC
GGCTGCGTGC GCGAGGGCGA CACCGTCGCC CGCATCGGCG GCGACGAGTT CGTGGTGATG
CTCGGCGCCG ACCTCAGCAC CGCCACCGAC GAGGCCGCCT CGCATGCGCG CAGCGTCGCC
GAGAAGATCC TCGCCGCGCT CAATCTGCCG TACCTGATGA GCGGCGAGTT CGTGCACTGC
AGCGCCAGCC TCGGCGTGGC GCTGTTCAAC GATCACCACG ACACGGTCGA CGAACTGCTC
AAGCGCGCCG ACCAGGCGAT GTACCAGGCC AAGGCGGGCG GACGCAACAC GCTGCGCTTC
TTCGACACCG CGGTCCAGCA GACCATGATG CTGCGCGCCG CCCTCGAAGC CGAGCTGCGC
CTGGCGGTGC AACGCGATGA ACTGGTGCTG TGCTACCAGC CGGTGATCGA CCACCAGAAC
CGCCTGCTCG GCGCCGAGGC CCTGGTGCGC TGGAAGCACC CGCGGCGCGG CCTGGTGTCG
CCGGCCGAGT TCATCCCGAT CGCCGAGGAC CGCGGCCTGA TCCAGGCCAT CGGCCGCTGG
GTGCTCGAGA CCGCCTGCAC GCAACTGGCC ACCTGGGCCG CCGACCCCGC GACGGCCGAT
CTCGTGCTGT CGGTCAACGT GAGCGCACGT GAACTGCACG AGCCGCAATT CGTCGAGCGG
GTGATCGAGA TCCTCGCGTG CACCGGCGCC AGGCCGGCCC GGCTCAAGAT CGAGCTCACC
GAAAACGCGG TGCTCGACCA CGTCGACGAC AGCATTGCCA AGATGAAGCG CCTGAAGGCG
CACGGCATCC GCCTGGCGCT CGACGATTTC GGCACCGGCC ACGGCTCGCT CTCGCTCCTC
AAGCGCCTGC CGCTCGACGA ACTGAAGATC GACCGCACCT TCGTCCAGGA TCTGCTGACC
GACACGCACG ACGCGGCGAT CGCCCGCACC ATCGCCGCCC TGGGGCTCAA CCTCGGCATC
TCGGTGGTGG CCGAAGGCGT CGAAACCCCC GCCCAGCGCG ACCTGCTGAT CGCCTGCGGC
TGCCGCATCT TCCAGGGCGA CCTGTTCGGC CCACCGGCAG CACTGGAGGC GCTGGCCCGG
ATGGCCATGC CAAAATGA
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| Protein sequence | MSRRVRSQPG ASRQGPDLPA AAAAATPVAT EAERRAEAMA HELQVHRIEL EMQNDELRRA
QIALETARDR YIDLYDFAPV GYFTLDTNGL ITEANLTGAD LLGEARAKLV GRRFERYIAP
VDRDRWHRHA LSLSRRGEPG RIELLVQGAG GRSIHAQLDG LMARANHDAP LLRIALTDIS
ERKHAESELR LAATAFEAQE GMMITDAHGV IERVNKAFTQ MTGYSAAEAI GQTARLLHSG
RHDPAFYAAM WDSLQRTGTW QGEVWNRRKC GEVYAEWLTI TAVQDEHRTV TRYVGTMLDI
SQRKAREEEI AQLAFYDPLT GLPNRRLLKD RLNQAMAISA RSQREGALLF IDLDHFKDIN
DTRGHDKGDL LLQNVAQRLS GCVREGDTVA RIGGDEFVVM LGADLSTATD EAASHARSVA
EKILAALNLP YLMSGEFVHC SASLGVALFN DHHDTVDELL KRADQAMYQA KAGGRNTLRF
FDTAVQQTMM LRAALEAELR LAVQRDELVL CYQPVIDHQN RLLGAEALVR WKHPRRGLVS
PAEFIPIAED RGLIQAIGRW VLETACTQLA TWAADPATAD LVLSVNVSAR ELHEPQFVER
VIEILACTGA RPARLKIELT ENAVLDHVDD SIAKMKRLKA HGIRLALDDF GTGHGSLSLL
KRLPLDELKI DRTFVQDLLT DTHDAAIART IAALGLNLGI SVVAEGVETP AQRDLLIACG
CRIFQGDLFG PPAALEALAR MAMPK
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