| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3460 |
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| Symbol | |
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| ID | 6159895 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3863110 |
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| End bp | 3864702 |
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| Gene Length | 1593 bp |
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| Protein Length | 530 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666235 |
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| Product | xanthine dehydrogenase, small subunit |
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| Protein accession | YP_001792483 |
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| Protein GI | 171060134 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG4630] Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A |
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| TIGRFAM ID | [TIGR02963] xanthine dehydrogenase, small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.266307 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACA CCCGGCCCAT CCGTTTCCAT CACCGCGGCA GCGTGCAGAC CGTTGCCGGC
GCACCCACCA CCCGCAGCCT GCTCGAGTGG CTGCGCGAAG ACCAGCGCTG CACCGGCAGC
AAGGAAGGCT GCAACGAGGG CGACTGCGGC GCCTGCACCG TGATCGTGGC CGAACTCGCC
ACCGAACAGG ACCGCAAGAC ACCCGGCGCC ACGCTGATCG GCAGCGGCGA TTCGACCTTG
CGGCTGCGCA ACCTCAACGC CTGCCTCACT TTCCTGCCCA CGCTCGACGG CAAGGCGCTG
ATCACGGTCG AAGACCTGCC ACGCGCCTGC GGTCTGCCGG CAGGTCAGCT GCATCCCGCG
CAGCAGGCGA TGGTCGATTG CCACGGCTCG CAATGCGGTT TCTGCACGCC CGGTTTCGTG
ATGACGATGG CCACGGTGCA CGAGCGCCAG GCGGCAACGG ATCAGCCCGC CAGCCGCGCC
ACGCTGTCCG ACGACCTGGC CGGCAACCTG TGCCGCTGCA CCGGCTATCG GCCGATCCTG
GACGCCGCGA TGCGGCTCGG CGACGCCACC GCCGCCCGCA TCGACGCCGC GCCGATCGCC
GCCGCGCTGC AGGCGCTGGC GCACGATGCG CCGCTGCATT ACGCCGCGCA GAACCCGGCC
GTGATCGCCG ACGGCATCGC GCGCACCGAC CATTTCCACG CGCCGCGCAC GGTGGCCGAA
CTGGCCGCGC TGCGCCTCGC CAACCCGCAG GCACGCCTGC TGGCCGGCGC CACCGACATC
GGCCTGTGGG TCAACAAGCT GTTCCGCGAC CTGGGCGAGC TGCACTTCAT CGGCGAAGTG
GCCGAGCTGA AGCGGCTGGC CGTCATCGAC GGCGCGCTGC ACATCGGCGC GGCCGTGAGC
CTGGAAGACG CCTGGTCCGC GCTCGCCACG GCCACGCCCG AGCTGACCGA AGTCTGGAAG
CGTTTCGCCT CGCCGCCGGT GCGCCACGCC GGCACGCTGG GCGGCAACAT CGCCAACGGC
TCGCCGATCG GCGACGGCGC GCCGGTGCTG ATGGCGCTCG ATGCACAACT CGTGCTGCGC
CTGGGCGACG TCACGCGCAC GGTCGCGCTG AAAGACTTCT ACCTCGGCTA CATGGTCAAC
GCGCTGGCGC CGGGCGAGTT CATCCAGGAA CTGCGCGTGC CGCTGCCCGA TGCACACACC
CTCGTGCGGG TCTGGAAAGT CTCCAAGCGC TACGACAGCG ACATCTCGGC GCTATGCGGC
GCATTCGCGT TGAAGCTCGA TGCCAACAGT GTGATCGGCC ATGTGCGCCT GGCCTGGGGC
GGCCTCGCCG CGACCGTGAA ACGCGCGGTC GGCGCCGAAG TCGCGCTGCT CGGCCAGCCC
TGGAACGAGG CCACGCTGCA AGCGGCTCAA GTCGCGCTGG CGCAGGAGTT CCAGCCGCTC
GACGACCTGC GCGCCAGCGC CGCCTACCGC CGCACGGTGG CCGCCAATCT GCTGCGCCGG
CTGTGGCTCG AAACCCGCCT CGACGCGCCT CTCGACGCGA CGCACACCCG CGTCTGGAAC
ACCGCCAACC CGACCGAATC GGAGGCCGCA TGA
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| Protein sequence | MTDTRPIRFH HRGSVQTVAG APTTRSLLEW LREDQRCTGS KEGCNEGDCG ACTVIVAELA
TEQDRKTPGA TLIGSGDSTL RLRNLNACLT FLPTLDGKAL ITVEDLPRAC GLPAGQLHPA
QQAMVDCHGS QCGFCTPGFV MTMATVHERQ AATDQPASRA TLSDDLAGNL CRCTGYRPIL
DAAMRLGDAT AARIDAAPIA AALQALAHDA PLHYAAQNPA VIADGIARTD HFHAPRTVAE
LAALRLANPQ ARLLAGATDI GLWVNKLFRD LGELHFIGEV AELKRLAVID GALHIGAAVS
LEDAWSALAT ATPELTEVWK RFASPPVRHA GTLGGNIANG SPIGDGAPVL MALDAQLVLR
LGDVTRTVAL KDFYLGYMVN ALAPGEFIQE LRVPLPDAHT LVRVWKVSKR YDSDISALCG
AFALKLDANS VIGHVRLAWG GLAATVKRAV GAEVALLGQP WNEATLQAAQ VALAQEFQPL
DDLRASAAYR RTVAANLLRR LWLETRLDAP LDATHTRVWN TANPTESEAA
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