Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3458 |
Symbol | |
ID | 6159893 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3860725 |
End bp | 3862029 |
Gene Length | 1305 bp |
Protein Length | 434 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641666233 |
Product | guanine deaminase |
Protein accession | YP_001792481 |
Protein GI | 171060132 |
COG category | [F] Nucleotide transport and metabolism [R] General function prediction only |
COG ID | [COG0402] Cytosine deaminase and related metal-dependent hydrolases |
TIGRFAM ID | [TIGR02967] guanine deaminase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.164027 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCAC CCGTTCGTCA AGCCCTGTTC GGCGACCTGC TCGACTTCAC CGCCGACCCC GGCTGGGCCG CGCCGGCCGA TGCGCTGCCC GCCGTGCGCT GGCGGCCCGA TCACTGGCTG CTGATCGAGG ACGGCCGCAT CGTCGCCGCC CAGCCGCAGG CGCCGGGCGA CGACTGGCAG CGCCACGATC ACGCCGGCCG GCTGATCCTG CCGGGTTTCA TCGACACCCA CGTGCACAGC CCGCAGCTCG ACGTCATCGC CAGCTACGGC ACCGAGCTGC TCGACTGGCT GGAGCGCTAC ACCTTTCCGG CCGAGCGCCG CTACGCCGAC CCGGCCGTGG CACACGCCGG CGCGCAGACG TTTCTCGACG CCTTGCTCGC GCACGGCACG ACCTCGGCGG TGGTGTTCCC GACCGTGCAC GCGGTCTCGG CCGATGCGCT GCTGGCCGGC GCCCATGCCC GCGGCATGCG GCTGATCGCC GGCAAGGTGC TGATGGACCG TCATTGCCCC GACGGCCTGC GTGACGACGT GGCCAGCGCC GACGCCGACA GCCGCACGCT GATCGAACGC TGGCACGGCA CCGGCCGCCT GTCCTACGCG ATGACGGTGC GCTTCGCACC CACCAGCACG CCCGAACAGC TCGCGATGGC CGGGCGTTGG ATGGCCGAGG TGCCCGGCCT CTACATGCAG ACCCACGTGG CCGAGAACCG CACCGAGGTG GCGTGGGTGG CCCAGCTGTT CCCCGAGGCG CGCAGCTACC TCGACGTCTA CCACCGCGCC GGCCTGCTCA ACGGACGCGC CGTGCTGGCA CACGGCATCT GGCTCGACGA CACCGACCGC GCGCTGCTGG CCGATACCGG CGCGCAGATC GCCCACAGCC CGAGCAGCAA CCTGTTCCTG GGCAGCGGCC TGTTCGGCTG GCAGGCTCTT GAGGCGGCCG GCGCGCACGT CAGCATGGCC AGCGACGTGG GTGGCGGCAC CAGCCTGTCG ATGCAGCGCA CGCTCGCCGA TGCCTACAAG ATCCAGGCGC TGCAGGGCGT GCGGCTGACG GCCTTCAAGG CGCTGCATGC GGCCACCCGC GGCGGCGCCG AAGCGCTCGG CCTGGCGCAC GAGATCGGCT CGTTCGATGC CGGCTGCAGC GCCGACCTGT GCGTGTGGGA CTGGTCGCAC GGCGCCGTGG CCCGGCACCG CGACGCCTTG GCGCAGGATT TGCACGAACG CCTGTTTGCC TGGCTGGTGC TGGGCGACGA ACGCAACCTG CGCGCCACCT GGGTGGCCGG GCAGCCCCGC CATCAACGCG ATTGA
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Protein sequence | MSAPVRQALF GDLLDFTADP GWAAPADALP AVRWRPDHWL LIEDGRIVAA QPQAPGDDWQ RHDHAGRLIL PGFIDTHVHS PQLDVIASYG TELLDWLERY TFPAERRYAD PAVAHAGAQT FLDALLAHGT TSAVVFPTVH AVSADALLAG AHARGMRLIA GKVLMDRHCP DGLRDDVASA DADSRTLIER WHGTGRLSYA MTVRFAPTST PEQLAMAGRW MAEVPGLYMQ THVAENRTEV AWVAQLFPEA RSYLDVYHRA GLLNGRAVLA HGIWLDDTDR ALLADTGAQI AHSPSSNLFL GSGLFGWQAL EAAGAHVSMA SDVGGGTSLS MQRTLADAYK IQALQGVRLT AFKALHAATR GGAEALGLAH EIGSFDAGCS ADLCVWDWSH GAVARHRDAL AQDLHERLFA WLVLGDERNL RATWVAGQPR HQRD
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