| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3457 |
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| Symbol | |
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| ID | 6159892 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3859107 |
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| End bp | 3860666 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666232 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001792480 |
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| Protein GI | 171060131 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3845] ABC-type uncharacterized transport systems, ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.244648 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGA CCCCTCGACT GGTGCTGCGC GGCATCACCA AGCAATACCC GGCGGTGCGC
GCCAACGACA GCGTCGGCCT GACCGTGATG CCCGGCCAGA TCCACGCCGT GCTGGGCGAG
AACGGCGCCG GCAAGTCGAC GCTGATGAAG ATCATCTACG GCGCGGTGCA GCCCGACGCC
GGCCAGATCG AATGGAACGG CGAGCGCGTC ACGATCACCA GCCCGGCGCA GGCGCGCGCG
CTCGGCATCA GCATGGTCTA CCAGCACTTC TCGCTGTTCG ACACGCTGAC CGCAGCCGAG
AACGTGCTGC TCGGCCTGGG CAAGTCGATG GGCCTGATGG AGGTGATCGA CCGCATCCGC
GCGGTGGCCG GTGAATACGG CCTCGACGTC AACCCGCTGC GCCCGGTGCA CACGCTCAGC
GTCGGCGAGC GCCAGCGGGT CGAGATCGTG CGCGCGCTGC TGACGCGCCC GAAGCTGCTG
ATCCTCGACG AGCCGACCTC GGTGCTGACG CCGCAGGCGG TCGACAAGCT GTTCGTCACC
TTGCGCAAGC TCGCCGAGCA GGGTTGCTCG ATCCTCTACA TCAGCCACAA GCTCGACGAG
ATCCGCGCGC TGTGCCACCA CTGCACGGTG CTGCGCGGCG GCAAGGTGAC CGGCGAGGTC
GATCCCGCGC AGGAGAGCAA CGCGTCGCTG TCGCGCCTGA TGATCGGCTC GGAGCCGCCG
GCGCTGACGC ATCGCCCGGC CAGGCCGGGT GCGCTGGCGC TCGAGGTGCG CGGCCTGAGC
CTGGCCAAGC AGGATCCGTT CGGCATGGAC CTGCGCGACG TCAGCCTCGA CGTGCGAGCC
GGCGAGATCG TCGGCATCGC CGGTGTGTCG GGCAACGGCC AGCAGGAGCT GATGGCGTCG
CTGTCGGGCG AGGATCCGCG CGGCACGCCG GGCAGCGTGA TGCTGTTCGG CCGCGACGTG
TCGCGCGCCT CGCCGCGTGC GCTGCGGCGC CAGGGCATGC ATTTCGTGCC CGAGGAGCGG
CTCGGCCGCG GCGCGGTGCC CACGCTTTCG CTCGCGCACA ACGTGCTGCT CACGCGCACC
GAAGGCGTCG ACCGGCGCAG CGGCTGGCTG AACATGGCGG CGATCCGCCA GCAGGCGGCC
GGGTTGATCG AGCGTTTCAA CGTCAAGGCC GGCGGGCCGG AGGCGGCGGC CAAGTCGCTG
TCGGGCGGCA ACCTGCAGAA GTACATCGTC GGCCGCGAGA TCGAGGCCGG GCCGAAGCTG
CTGCTGATCA GCCAGCCGAC CTGGGGCGTC GACGTGGGTG CTGCGGCACA GATCCGCGGC
GAACTGCTGG CGCTGCGCGA CGCCGGCTGC GCGGTGCTGG TGGTCAGCGA GGAGCTCGAC
GAGCTGTTCG AGATCTGCGA TCGGCTGGTC GTGATCGCGC AAGGACGGCT GTCGCCGTCG
ATCGCCACCG CGCAGGCCAG CGTCGAGCGC ATCGGCGAAT GGATGTCGGG GCTGTGGCCC
GAACCGGTCA ACCGCAGCAC GGCTGCCATC GAAGGGGAGC TCGTTCATGC TCAAGCTTGA
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| Protein sequence | MSQTPRLVLR GITKQYPAVR ANDSVGLTVM PGQIHAVLGE NGAGKSTLMK IIYGAVQPDA
GQIEWNGERV TITSPAQARA LGISMVYQHF SLFDTLTAAE NVLLGLGKSM GLMEVIDRIR
AVAGEYGLDV NPLRPVHTLS VGERQRVEIV RALLTRPKLL ILDEPTSVLT PQAVDKLFVT
LRKLAEQGCS ILYISHKLDE IRALCHHCTV LRGGKVTGEV DPAQESNASL SRLMIGSEPP
ALTHRPARPG ALALEVRGLS LAKQDPFGMD LRDVSLDVRA GEIVGIAGVS GNGQQELMAS
LSGEDPRGTP GSVMLFGRDV SRASPRALRR QGMHFVPEER LGRGAVPTLS LAHNVLLTRT
EGVDRRSGWL NMAAIRQQAA GLIERFNVKA GGPEAAAKSL SGGNLQKYIV GREIEAGPKL
LLISQPTWGV DVGAAAQIRG ELLALRDAGC AVLVVSEELD ELFEICDRLV VIAQGRLSPS
IATAQASVER IGEWMSGLWP EPVNRSTAAI EGELVHAQA
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