Gene Lcho_3450 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3450 
Symbol 
ID6159867 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3852920 
End bp3853633 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content62% 
IMG OID641666225 
Producthypothetical protein 
Protein accessionYP_001792473 
Protein GI171060124 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.01546 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTGGA AGCTCATACG TCGTCGTCTA TCTGTCAGTG CGCCCCGTGT CACCGTGCGC 
AGTCGCCTGC CTTGGCCGGT GAGGTGGATC TTCTTCGCGG TGATGCTGGG CTTCTGCGCT 
GCCCTGGGCC TTTGGGCCTA TGAATTCGGC AAGGACTTTG CCGGTCTCGA CCGGGGCGCT 
CACGAAGAAC TGAAGCTGCT GCGAGAAGAA CTGGTGCGCC TGCGCTCCGA GCATGAGCGC 
GCGATCTCGA TCGCCAACTC TGCCGACAGT CTGCTCAAGG CCGAACGGGC GACGCAGGAA 
AGTCTTGCGT CCCGGGTGAA GGCACTCGAG TCCGAGAACC TGGCGCTGAC GCGCGACCTG 
GCCTTCTTCG AGCGGCTGAT GCCCTCCACG GGCAGTACGA AGCTGTTGAC CTTGCGGGGT 
TTGCAGGTCG AGATCGAGGC GCCCGGGCGC TTGCGGTTCC AGGGCCTGTT GATACTGGCC 
GGCGGACGTT CGGGCGAATT CAAGGGTCGA TACGAGCTGC ATCTGAGCGG CACGCAGGAC 
GGACGCAGTT GGACACAGGC TGTCCAGATC GCAACAAATA CTGTAAATCT GAAACAGTAT 
CAACGCCTGG AAGGTGCGGT CGACTACCCG GCGACGGCCG TGGTAAAACA ACTGGAGGTC 
AAGGTCCTCG ATGCCAGCGG CAAGGTGCAG GCCACCGAAA TTGCCCGCCT GTGA
 
Protein sequence
MRWKLIRRRL SVSAPRVTVR SRLPWPVRWI FFAVMLGFCA ALGLWAYEFG KDFAGLDRGA 
HEELKLLREE LVRLRSEHER AISIANSADS LLKAERATQE SLASRVKALE SENLALTRDL 
AFFERLMPST GSTKLLTLRG LQVEIEAPGR LRFQGLLILA GGRSGEFKGR YELHLSGTQD 
GRSWTQAVQI ATNTVNLKQY QRLEGAVDYP ATAVVKQLEV KVLDASGKVQ ATEIARL