| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3446 |
|---|
| Symbol | |
|---|
| ID | 6160279 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3849360 |
|---|
| End bp | 3850754 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641666221 |
|---|
| Product | peptidase M23B |
|---|
| Protein accession | YP_001792469 |
|---|
| Protein GI | 171060120 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0198039 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCAAGA ATTTCGGTGA ACACACGCGC CATTGGATGG CGCGTGCAGA ACTGGCGCTA
CGCCATCACC CCCGGGTCAT CAGCGGCGCC GTCCTCACGC TGCTGCTGGG CAGCGGCGTG
ACGGCCTTCG GGGTCGCACC GCTGACGGCG ATCGACACCA CGCCGGTGGC CACCCGCATC
ATCAGTGAAA GTTTCGCGGC GCAAGATCTG TCGGGCCAGT TGCAGGCGCT CGACGAACTG
GCGCTGACGC TGCACCGCAG CGACGTCACG CGGTCGACCG ACACCGCCGA CACCCTGCTC
AGCCGCCTGG GCATCCACGA TCCCGAAGCC GCAGCCTTCC TGCGCAACGA TCGCACCGCC
CAGCGCACGC TGATGGGCCG CAGCGGCAAG CTGATCCGCG CCCGCGGCGA CGGCAGCGCC
GGCGGCGGTC AGCTGCAGGA ACTGGTGGTG CGCGGTCCGG CGGCCGACAG CCGGCACGCG
GCCACCCATT TCAATCGCCT GACGATCACC CGCACCGCCC AGGGCCTGAG CGCCACCGCG
CAGGATCTCC CGCTGGTGGC CGACGTGCAG GTCGGTTCGG GCACGATCGA GTCGAGCCTG
TTTGCCGCCG CAGACGACGC CGGGCTGCCC GACGCCGTGA CGGTCCAGAT GGCCGAGATC
TTCGGCAGCG AGATCGATTT CCGCCGCGAA CTGCGCAAGG GCGACACCTT CTCGGTGGTC
TACGAAACGC TCACCGCCGA CGGCGAGCCC ATCACCTGGC ACTCGGAAGC CGGCCGCGTG
CTGGCCGCGC GTTTCGTCAA CGACGGCCGC ACCCATGAGG CCGTGTGGTT CCAGGATGGC
GACCAGAAGG GTGGCTACTA CGGCCCGGAC GGCAAGAGCA AGACGCACCT GTTCCTGACG
TCGCCGCTGA AGTTCTCGCG CGTGAGCTCG GGCTTCGCGA TGCGCTTCCA TCCGATCCTG
AAGCAGTGGC GGGCCCATCT GGGCGTCGAC TATGCGGCGC CCACCGGCAC GCCGGTGCGC
TCGGTCGGCG ACGGCGTGGT GGATTTCGCC GGCGTCCAGA ACGGCTACGG CAAGGTGGTG
GTGGTTCGGC ATGCCGGTGA ACGCAGCACC GTGTACGCAC ACCTGAGCCG CATCGACGTG
CGCAAGGGCG AGCGGATCAC GCAGGGCGCA AGCCTCGGCG CGGTGGGCTC GACCGGCTGG
GCCACCGGCC CGCACCTGCA TTTCGAATTC AAGCTGGCGG GCAAGCAGGT CGATCCGGTC
AAGATCGCCC GGGCCTCCGA AACCGTCGAA CTGCCCGCCG CCGCCAAGCC CCGCTTCGAC
AACGTGGCGG CCGTGGCGCG CGAGCGGCTG GCCGCCGGCA TGCATCGGGC TGGCGCAGTG
GCTCGCATGG AGTGA
|
|---|
| Protein sequence | MVKNFGEHTR HWMARAELAL RHHPRVISGA VLTLLLGSGV TAFGVAPLTA IDTTPVATRI
ISESFAAQDL SGQLQALDEL ALTLHRSDVT RSTDTADTLL SRLGIHDPEA AAFLRNDRTA
QRTLMGRSGK LIRARGDGSA GGGQLQELVV RGPAADSRHA ATHFNRLTIT RTAQGLSATA
QDLPLVADVQ VGSGTIESSL FAAADDAGLP DAVTVQMAEI FGSEIDFRRE LRKGDTFSVV
YETLTADGEP ITWHSEAGRV LAARFVNDGR THEAVWFQDG DQKGGYYGPD GKSKTHLFLT
SPLKFSRVSS GFAMRFHPIL KQWRAHLGVD YAAPTGTPVR SVGDGVVDFA GVQNGYGKVV
VVRHAGERST VYAHLSRIDV RKGERITQGA SLGAVGSTGW ATGPHLHFEF KLAGKQVDPV
KIARASETVE LPAAAKPRFD NVAAVARERL AAGMHRAGAV ARME
|
|---|
| |