Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3446 |
Symbol | |
ID | 6160279 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3849360 |
End bp | 3850754 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641666221 |
Product | peptidase M23B |
Protein accession | YP_001792469 |
Protein GI | 171060120 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.0198039 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCAAGA ATTTCGGTGA ACACACGCGC CATTGGATGG CGCGTGCAGA ACTGGCGCTA CGCCATCACC CCCGGGTCAT CAGCGGCGCC GTCCTCACGC TGCTGCTGGG CAGCGGCGTG ACGGCCTTCG GGGTCGCACC GCTGACGGCG ATCGACACCA CGCCGGTGGC CACCCGCATC ATCAGTGAAA GTTTCGCGGC GCAAGATCTG TCGGGCCAGT TGCAGGCGCT CGACGAACTG GCGCTGACGC TGCACCGCAG CGACGTCACG CGGTCGACCG ACACCGCCGA CACCCTGCTC AGCCGCCTGG GCATCCACGA TCCCGAAGCC GCAGCCTTCC TGCGCAACGA TCGCACCGCC CAGCGCACGC TGATGGGCCG CAGCGGCAAG CTGATCCGCG CCCGCGGCGA CGGCAGCGCC GGCGGCGGTC AGCTGCAGGA ACTGGTGGTG CGCGGTCCGG CGGCCGACAG CCGGCACGCG GCCACCCATT TCAATCGCCT GACGATCACC CGCACCGCCC AGGGCCTGAG CGCCACCGCG CAGGATCTCC CGCTGGTGGC CGACGTGCAG GTCGGTTCGG GCACGATCGA GTCGAGCCTG TTTGCCGCCG CAGACGACGC CGGGCTGCCC GACGCCGTGA CGGTCCAGAT GGCCGAGATC TTCGGCAGCG AGATCGATTT CCGCCGCGAA CTGCGCAAGG GCGACACCTT CTCGGTGGTC TACGAAACGC TCACCGCCGA CGGCGAGCCC ATCACCTGGC ACTCGGAAGC CGGCCGCGTG CTGGCCGCGC GTTTCGTCAA CGACGGCCGC ACCCATGAGG CCGTGTGGTT CCAGGATGGC GACCAGAAGG GTGGCTACTA CGGCCCGGAC GGCAAGAGCA AGACGCACCT GTTCCTGACG TCGCCGCTGA AGTTCTCGCG CGTGAGCTCG GGCTTCGCGA TGCGCTTCCA TCCGATCCTG AAGCAGTGGC GGGCCCATCT GGGCGTCGAC TATGCGGCGC CCACCGGCAC GCCGGTGCGC TCGGTCGGCG ACGGCGTGGT GGATTTCGCC GGCGTCCAGA ACGGCTACGG CAAGGTGGTG GTGGTTCGGC ATGCCGGTGA ACGCAGCACC GTGTACGCAC ACCTGAGCCG CATCGACGTG CGCAAGGGCG AGCGGATCAC GCAGGGCGCA AGCCTCGGCG CGGTGGGCTC GACCGGCTGG GCCACCGGCC CGCACCTGCA TTTCGAATTC AAGCTGGCGG GCAAGCAGGT CGATCCGGTC AAGATCGCCC GGGCCTCCGA AACCGTCGAA CTGCCCGCCG CCGCCAAGCC CCGCTTCGAC AACGTGGCGG CCGTGGCGCG CGAGCGGCTG GCCGCCGGCA TGCATCGGGC TGGCGCAGTG GCTCGCATGG AGTGA
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Protein sequence | MVKNFGEHTR HWMARAELAL RHHPRVISGA VLTLLLGSGV TAFGVAPLTA IDTTPVATRI ISESFAAQDL SGQLQALDEL ALTLHRSDVT RSTDTADTLL SRLGIHDPEA AAFLRNDRTA QRTLMGRSGK LIRARGDGSA GGGQLQELVV RGPAADSRHA ATHFNRLTIT RTAQGLSATA QDLPLVADVQ VGSGTIESSL FAAADDAGLP DAVTVQMAEI FGSEIDFRRE LRKGDTFSVV YETLTADGEP ITWHSEAGRV LAARFVNDGR THEAVWFQDG DQKGGYYGPD GKSKTHLFLT SPLKFSRVSS GFAMRFHPIL KQWRAHLGVD YAAPTGTPVR SVGDGVVDFA GVQNGYGKVV VVRHAGERST VYAHLSRIDV RKGERITQGA SLGAVGSTGW ATGPHLHFEF KLAGKQVDPV KIARASETVE LPAAAKPRFD NVAAVARERL AAGMHRAGAV ARME
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