Gene Lcho_3443 details

Gene Information

• Locus tag: Lcho_3443
• ID: 6160276
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3845900
• End bp: 3846541
• Gene Length: 642 bp
• Protein Length: 213 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 641666218
• Product: two component transcriptional regulator
• Protein accession: YP_001792466
• Protein GI: 171060117
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 25
• Fosmid unclonability p-value: 0.0278745
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGTGTAC TCCTGCTTGA AGACGACATC GATCTGGGTC AGGCGGTCGA CGACCACCTG 
GAGGCGGCGG GCCATTCGGT CTACTGGTGC AAGCTGGTCT CCCAGGTGCG CAACGTGACC 
TTCGATCTGG CCCTGGTCGA CCTCAACCTG CCCGACGGCG ACGGCGTCGA CCTGGTGCGC 
TACTGGCGCC AGGCCGGACG CCTGACACCG GTGATCATGC TGACCGCACG TGACCAGGTC 
AGCGACCGCA TCCGAGGCCT GCAGGCGGGC GCCGACGACT ACCTCGTCAA GCCCTTCGAC 
CTCGACGAGA TGCTCGCCCG CATCGACGCC GTGCTGCGGC GCAGCTCACC CTCGCCGCGC 
CTGCAGGTGC ACGACAACGT GGTCGATCTC GAGCAGCGCC AGGTGCTGCA CCAGGGCCAG 
CCGCTCGACC TGACGGCCAT GGAATGGGCG GTGCTGCGCT GCCTGGCCAG CCGACCAGGA 
CGCATCTTCA ACCGCGGCGA AATCGATGTC GCGCTGGCCG CCGACGGCCA GCCCAGCAGC 
GACAGCAACA CGCTCGAGGT GATCGTCAGC CGGCTGCGCA AGAAGCTGGG GGCCGACGTG 
ATCAGCACCC ATCGCGGCAT GGGCTATCGG CTCGATGTCT GA 

 

Protein sequence

MRVLLLEDDI DLGQAVDDHL EAAGHSVYWC KLVSQVRNVT FDLALVDLNL PDGDGVDLVR 
YWRQAGRLTP VIMLTARDQV SDRIRGLQAG ADDYLVKPFD LDEMLARIDA VLRRSSPSPR 
LQVHDNVVDL EQRQVLHQGQ PLDLTAMEWA VLRCLASRPG RIFNRGEIDV ALAADGQPSS 
DSNTLEVIVS RLRKKLGADV ISTHRGMGYR LDV