| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3431 |
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| Symbol | |
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| ID | 6163125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3831726 |
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| End bp | 3833429 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641666206 |
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| Product | polypeptide-transport-associated domain-containing protein |
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| Protein accession | YP_001792454 |
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| Protein GI | 171060105 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00052486 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCATGA ACTCCTTGCC CCCCGCCGTT CGCGGCCTGT CTGCCGGCCT GTTGCTGGCG
TGCACCCTGA CCCAGGCCCA GACCGCGCCG GATGCGGGCA ACCTGCTGCT CGATGTCGAG
CGCACCCAGC CGACGCCTCG GCCGGCGCCG GCCCTGCCGA GCCCCAAGCC CCAGGGACCG
ACCGACACCG CCGAGGGTGC GCGGGTGCAG GTCGGCAGCT TTCGCCTGAC CGGCGCGACC
CTGGTGCCCG AGACCGACCT GCAGGCCGCG CTGGCCGCCT GGATCGGCAA GCCGTCGACC
TTTGCCGACC TGCGCCGCGC CGCCGACGCG GTGGCCGAGG TCTACCGCCA GCGCGGTTTC
CTGGTGCGTG CCTATCTGCC CGACCAGGAC ATCCGCGACG GGGCGGTCAC CATCGCGGTG
CTCGAAGGCC GCCTCGGCGC GGTGCGTGTG GACCGCCCGC AGGCGGGCCG ACACCTGTCG
GACGAGCAGG TGCTGGCCTA CATGGGCGCA CGCCAGAAGA TCGGCGAACC GGTGCGGCCG
GACGACGTGC AGCGCGCCGT CAGCCTGCTC AACGAGATGC CGGGCCTGAG CGCGAGTTCG
CTGCTCGAAC CGGGCGACAA GGCGGGCGAG TCGCGCCTGG TGGTGTCGGT GCAGGACACC
CCGCGTTACG CCGGCCTGGC CCAGATCGAC AACGCCGGCT CCAAGGCCAG CGGCGCCGAG
CGTCTGACGC TGGGCGGCAC CGTCAACAGC CCGCTGGGCC TGGGCGACCA GGTGCAGGTG
CTGGTCAACA CCAGTCGCGG TTCGACCTAC GGGCGCGCCG CCTACAGCCT GCCGGTCGGC
CACGACGGCC TGCGCGTGGG CGCTTCGGCC TCGCGCCTGC ACTACGGCTA CAGCCTGTCG
GGCACCCGCT ACACCGGCGG CGCCGGCGTG CTGGGCCTGA CGCTGAACTA CCCCTGGCTG
CGCAGCACCG CCGGCAAGCT CAACGCCACC TTTGGCCATG ACCGCAAGCG GTTCGACAAC
GCCGTGGCCG GCATCGCGCT CAACGACAAG CGCCTGAACC TGAACACCCT GGGCCTGGAC
GGCGAATGGC TCGACGACGC CTTCGGCGGC GGCATCACCC AGTTCAGCCT CGGCCTGACG
CTGGGCCGGC TCGATCTCGG CGGCAATGCC GGCGACCTGG CGTCCGACCA GATCGCCAAC
GGCCCCGACC GGCAAGGCCG CTTCCGCAAG CTCAACGCCT CGCTGACGCG CCTGCAGCGC
ATCGACCGGG TCAACACGCT GTCGGCCCAG CTGTCGGGCC AGTTCGCCAG CGGCAACCTC
GATTCGTCGG AGAAGTTCCT CGCCAGCGGC ACCTCGGCGG TGCGCGCCTA TTCGAGCTCG
GAGCCCAGCG GCGACGACGG CCGGCTGCTG AGCCTGGAGT GGCGCCGTCA ATACGGAGCC
GATCTGTCGG TGGCGCTGTT CCACGACCGC GCCTGGCTGA CCCGCGACCA CACGCTCAAC
GTCGCCAGCC TGAGCCCGAA CCGCTACACG CTGGCCGGCA GCGGCGTCGG CGTGACCTGG
GGCAAACCCA GCGCGGTGCT GGTGCGTGCC AGCCTGGCCT GGCGCCACGG CAGCAACCCG
ACCCGCAACC TGGCCACCGA CGCCGACGGC GACGGCACAA GGCGCAACCC GCGCCTGTTC
GTCTCCGCGC TCAAGACCTT CTGA
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| Protein sequence | MTMNSLPPAV RGLSAGLLLA CTLTQAQTAP DAGNLLLDVE RTQPTPRPAP ALPSPKPQGP
TDTAEGARVQ VGSFRLTGAT LVPETDLQAA LAAWIGKPST FADLRRAADA VAEVYRQRGF
LVRAYLPDQD IRDGAVTIAV LEGRLGAVRV DRPQAGRHLS DEQVLAYMGA RQKIGEPVRP
DDVQRAVSLL NEMPGLSASS LLEPGDKAGE SRLVVSVQDT PRYAGLAQID NAGSKASGAE
RLTLGGTVNS PLGLGDQVQV LVNTSRGSTY GRAAYSLPVG HDGLRVGASA SRLHYGYSLS
GTRYTGGAGV LGLTLNYPWL RSTAGKLNAT FGHDRKRFDN AVAGIALNDK RLNLNTLGLD
GEWLDDAFGG GITQFSLGLT LGRLDLGGNA GDLASDQIAN GPDRQGRFRK LNASLTRLQR
IDRVNTLSAQ LSGQFASGNL DSSEKFLASG TSAVRAYSSS EPSGDDGRLL SLEWRRQYGA
DLSVALFHDR AWLTRDHTLN VASLSPNRYT LAGSGVGVTW GKPSAVLVRA SLAWRHGSNP
TRNLATDADG DGTRRNPRLF VSALKTF
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