| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3429 |
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| Symbol | |
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| ID | 6163123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3813513 |
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| End bp | 3814730 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666204 |
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| Product | general secretion pathway protein F |
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| Protein accession | YP_001792452 |
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| Protein GI | 171060103 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000239637 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCAGCCT ACAAGTTTGA AGCCCTCGAC GCCGACGGCA AGACCCAGAC CGGCCTGCTC
GACGGCGACA ACGCCAAGGC CGTGCGCTCG ATGCTGCGTG CGCGCGCGCT GGTGCCGCTG
GACGTGCAGG CGGTGGCGTC CGAACACACG TCGACCAGCG GCACGCGGCT GCTGAGCCGG
CGGGTCTTCA CGTCCACCAC GCTGGCGATC TGGACCCGCC AGCTCGCCGG CCTGGTCGGA
GCCGGGCTGC CGCTGGAGCG CGCGCTGACA GCGCTGGGCG ACGAGGCCGA GGATCCCAAA
CAAGGCGAGC TGCTCGCCCA CCTGCGCGCC GAGGTCAACG CCGGCTCGCC GTTCGCGCGG
GCGCTGGCCA GCGCGCCACG CGAGTTCGAC GACGTCTACC GCGCGGTGGT CGCGGCCGGC
GAGCAGAGCG GCCAGCTCGG CCGGGTGCTC GACAAGCTGG CCGACGATCT GGAAGAACGC
CAGGCGCTCA AGGGCAAGCT GATCGGCGCC ACGCTGTATC CGGCGATCGT CTCGCTGGTG
GCGATCGTGA TCGTGGTGTT CCTCGTCACC TACGTGGTGC CGCAGGTGGC GCAGGTGTTT
GCCGGCGGCA AGCGCGCGCT GCCCTTCCTG ACGATGGCGA TGCTGGCGAT CAGCGATTTC
CTGCGCACCT GGGGCTGGCT GCTGCTGCTG GCGCTGGCCG GCGCGGTGGC GATGCTGAGC
CTGGCGCGCC GCAACCCCGC CACCCGCGAG CGGCTCGACG CCGCCTTCCT GACGCTGCCG
CTGATCGGCA AGCTCGCGCG CGGCTACAAC GCGGCGCGTT TTGCCGGCAC GCTGGCGATG
CTGGCCGGCT CGGGCGTGCC GATCCTGAAA GCCTTGCAGG CCGCGGCCGA GACGCTCTCG
AACCGCGCCA TGCGCGCCGA CGCGCTCGAC GCGCTGGCGC AGGTGCGTGA AGGCGCGCCG
CTGGCGTCGG CGCTGGCGGC CAAGAAACGG TTTCCCGGCC TGCTGCAGAT GTTCGCCCGC
CTGGGCGAGC AGACCGGCGA GCTGCCGCTG ATGCTGCAAC GCGCCGCCAC CCAGCTCAGC
GCCGAGGTGC AGCGCCGCGC CATGCAGACC GCCACCATCC TGGAGCCGCT GCTGATCGTG
GTGATGGGCG CGGCGGTGAT GCTGATCGTG CTGGCGGTGC TGATGCCGAT CATCCAGCTC
AATACCTGGG TGAAGTGA
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| Protein sequence | MPAYKFEALD ADGKTQTGLL DGDNAKAVRS MLRARALVPL DVQAVASEHT STSGTRLLSR
RVFTSTTLAI WTRQLAGLVG AGLPLERALT ALGDEAEDPK QGELLAHLRA EVNAGSPFAR
ALASAPREFD DVYRAVVAAG EQSGQLGRVL DKLADDLEER QALKGKLIGA TLYPAIVSLV
AIVIVVFLVT YVVPQVAQVF AGGKRALPFL TMAMLAISDF LRTWGWLLLL ALAGAVAMLS
LARRNPATRE RLDAAFLTLP LIGKLARGYN AARFAGTLAM LAGSGVPILK ALQAAAETLS
NRAMRADALD ALAQVREGAP LASALAAKKR FPGLLQMFAR LGEQTGELPL MLQRAATQLS
AEVQRRAMQT ATILEPLLIV VMGAAVMLIV LAVLMPIIQL NTWVK
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