| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3428 |
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| Symbol | |
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| ID | 6161881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3811993 |
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| End bp | 3813408 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666203 |
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| Product | general secretory pathway protein E |
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| Protein accession | YP_001792451 |
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| Protein GI | 171060102 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.00010017 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCCACC CGCTGCCCTA CGCCTGGGCC AAGACCCAGC AGATCCTGCT CGAAGACGAC
AACGACCGGC TGGTGCTGTG GGCCGCCGCC GGCGTCAACC GCAGCGCGCT GGCCGAGGTG
CAGCGCGTCT ACGCCGTCGA CGCGCTCGAG ATCGAGGAGC CCGCCCGCCT GGCGCAGCGC
CTGGCCGCGG CCTACGCGGG CGGCGAGTCG AGCGCCGCGG CCGTGGTCGG CGAGGTCGAG
AGCGCCGTCG ATCTGAGCCG CATCATGCAG GACCTGCCGG CGGTCGAAGA CTTGCTGGAG
GCCAGCAACG ACGCGCCGAT CATCCGCATG CTCAACGCGC TGCTGACGCA GGCCGCGAAA
GACGGCGCCA GCGACATCCA CATCGAGCCC TACGAGCGTT CGTCGGCGGT GCGTTTCCGC
GTCGACGGCA CGCTGCGCGA GGTGGTGCAG CCCAACCGCG CGCTGCACGC CGCGCTGATC
AGCCGGCTGA AGATCATGGC CGAGCTCGAC ATCGCCGAAA AACGCCTGCC GCAGGACGGC
CGCATCAGCC TGCGCATCGG CGGGCGGGCG ATCGACGTGC GGGTCTCGAC GCTGCCGGGC
GTGCACGGTG AACGCGCGGT GCTGCGCCTC CTGGACAAGG GCGAGGCCAA GTTCTCGCTC
GAAGGCCTGG GCATGGCCGG CGACACGCTG GCCCGCTTTC AGAAACTGCT GGCGCAGCCG
CACGGCATCG TGCTCGTCAC CGGCCCGACC GGCTCGGGCA AGACCACCAC GCTCTACGCC
GGGCTGGGCG AGGTAGACAC CAGCACCACC AACATCCTGA CGGTGGAAGA CCCGGTCGAA
TACGAGCTGC CGGGCATCGG CCAGACCCAG GTCAACGCCA AGATCGACCT GACCTTCGCA
AAAGCCCTGC GCGCGATCCT GCGGCAGGAC CCGGACGTCA TCATGATCGG CGAGATCCGC
GACCACGAGA CCGCGCAGAT CGCCGTGCAG GCCTCGCTCA CCGGCCACCT GGTGCTGGCC
ACGCTGCACA CCAACGACGC GCCGAGCGCC GTCACCCGGC TGACCGACAT GGGCATCGAG
CCCTTCCTGC TCAGCTCCAG CCTGATCGGC GTGCTGGCGC AGCGGCTGGT GCGCAAGCTC
TGCAACGACT GCAAGCGCCA GGACGAGCGC GGGCGCTGGC ACCCGGTCGG CTGCACCGCC
TGCGGCATGA CCGGCTACCG CGGCCGCACC GGCATCTACG AACTGATGGT GGCCGACGAC
AAGCTGCGCG CGCTGATCCA CAACCGCGCC GCCGAGTCGC AGATCTTCGT GGCCGCTGAA
CAAGGTGGCA TGAAGACCAT GCGCGAGGAC GGCACCCGGC TGGTGGCGGA CGGCATCACG
TCCAGCGAAG AGCTGCTGCG GGTCACCCGA GAATGA
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| Protein sequence | MRHPLPYAWA KTQQILLEDD NDRLVLWAAA GVNRSALAEV QRVYAVDALE IEEPARLAQR
LAAAYAGGES SAAAVVGEVE SAVDLSRIMQ DLPAVEDLLE ASNDAPIIRM LNALLTQAAK
DGASDIHIEP YERSSAVRFR VDGTLREVVQ PNRALHAALI SRLKIMAELD IAEKRLPQDG
RISLRIGGRA IDVRVSTLPG VHGERAVLRL LDKGEAKFSL EGLGMAGDTL ARFQKLLAQP
HGIVLVTGPT GSGKTTTLYA GLGEVDTSTT NILTVEDPVE YELPGIGQTQ VNAKIDLTFA
KALRAILRQD PDVIMIGEIR DHETAQIAVQ ASLTGHLVLA TLHTNDAPSA VTRLTDMGIE
PFLLSSSLIG VLAQRLVRKL CNDCKRQDER GRWHPVGCTA CGMTGYRGRT GIYELMVADD
KLRALIHNRA AESQIFVAAE QGGMKTMRED GTRLVADGIT SSEELLRVTR E
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