Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3424 |
Symbol | |
ID | 6161877 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3806953 |
End bp | 3808239 |
Gene Length | 1287 bp |
Protein Length | 428 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 641666199 |
Product | general secretion pathway L |
Protein accession | YP_001792447 |
Protein GI | 171060098 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3297] Type II secretory pathway, component PulL |
TIGRFAM ID | [TIGR01709] general secretion pathway protein L |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0000831438 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCCTGC TGATCGTCCA ACTGCCACCA CGCAACCGCC TGGGCGCCAA CGCCGCCGGG AGCACTGCGC CTGCGCCGGC CGAACTGGCC TACGTGCTCA GCGCCGACGG CCAGAGCGTC GACGGCGAAG GCCGTTGCGC CGCGGCGCTG CTGCCGCGCG CCACCAGCCT GAGCGTGGTG ATGGCCGGCG CCGACGTCAG CTTTCACCGC CTGCTGTACC CCAAGGCACC GGCCTCGCGG CTGCGCGCGG CGCTGCGCGG CGTGCTCGAA GAACGCCTGC TCGACGACCC CGACCTGGTG CACGTGGCGC TGGCGCCCGA CGCCCACGCC GGCACCGAAT GCTGGGTCGC GGTCACCGAC CGGGCCTGGC TGGCCATCCA GATCGAGCTG ATCGAGCGCA CCGGCCGCGC GGTCGACCGC GTCATCTGCG CCGCCAGCCC CGCGGCCGAG GGCAGCGTCG GCGAACTCGA CGTGCAGACC CTCGCCAGCG GCGTCGGCGA AGCCGGCAAC GAACTGGCCG GCGTCACCTT CAGCAGCGCC GAGGGCGTCG CCTGCTGGCC CTGGGACACC CAGACCCGCC CCGGCGGCCT GGCCACCGCG CTGCTGCCCA GCCCGCTGCC GGCCGAACTG CGCTGCAGCG CCAGCCCGGC CTTCGTGCTG GCCACCGAGG CCTGGCTCGG CCGGCCGGTG GCGGTGCGCA GCCAGGCCCA GCGCCTGCTG GCCGCCGCAC ACGGCGGCTG GAACCTGCGC CAGTTCGATC TGGCCCCGCG CCACCGCGGC GCCACCCTGC TGCGCGATGC CTGGACGCAA CTGCGCACGC CCGCGTGGCG GCCCGCGCGC TGGGGCCTGG TCGGCCTGCT GGCCGCGCAG CTGATCGGCC TGAACGCCTG GGCCTGGATG CAGCGCAGCG AACTGCAGGA GCGCCGCACC GCCATGACTA ACCTGATGCG CAGCACCCAT CCGCAGGTGC GCGCCATCCT CGACGCGCCA CTGCAGATGC AGCGCGAGAA CGAGGCCCTG CGCGCCGCCG CCGGCCGCGC CGGTGACACC GACCTCGAAC CGATGCTGCA AGCCGCCGCC AGCGCCTGGC CCGACAACCT CGCGGTGCAG ACGCTGCGCT ACGAAAACGC CCAGCTCAGC CTCGGCGCCA CGCAGCTCGG TGCCGAACAG ATCGAGCGCC TGCGCAGCAG CCTGCAGCCG GCTGGCTGGC GGGTCGAAGG TGGCGCCGGC CTGCTGACGC TGCGCCGTGG CAGCGCACCC GCCGCCAACC CGGGCGGCCA GCCATGA
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Protein sequence | MSLLIVQLPP RNRLGANAAG STAPAPAELA YVLSADGQSV DGEGRCAAAL LPRATSLSVV MAGADVSFHR LLYPKAPASR LRAALRGVLE ERLLDDPDLV HVALAPDAHA GTECWVAVTD RAWLAIQIEL IERTGRAVDR VICAASPAAE GSVGELDVQT LASGVGEAGN ELAGVTFSSA EGVACWPWDT QTRPGGLATA LLPSPLPAEL RCSASPAFVL ATEAWLGRPV AVRSQAQRLL AAAHGGWNLR QFDLAPRHRG ATLLRDAWTQ LRTPAWRPAR WGLVGLLAAQ LIGLNAWAWM QRSELQERRT AMTNLMRSTH PQVRAILDAP LQMQRENEAL RAAAGRAGDT DLEPMLQAAA SAWPDNLAVQ TLRYENAQLS LGATQLGAEQ IERLRSSLQP AGWRVEGGAG LLTLRRGSAP AANPGGQP
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