| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3424 |
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| Symbol | |
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| ID | 6161877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3806953 |
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| End bp | 3808239 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641666199 |
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| Product | general secretion pathway L |
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| Protein accession | YP_001792447 |
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| Protein GI | 171060098 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3297] Type II secretory pathway, component PulL |
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| TIGRFAM ID | [TIGR01709] general secretion pathway protein L |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000831438 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCTGC TGATCGTCCA ACTGCCACCA CGCAACCGCC TGGGCGCCAA CGCCGCCGGG
AGCACTGCGC CTGCGCCGGC CGAACTGGCC TACGTGCTCA GCGCCGACGG CCAGAGCGTC
GACGGCGAAG GCCGTTGCGC CGCGGCGCTG CTGCCGCGCG CCACCAGCCT GAGCGTGGTG
ATGGCCGGCG CCGACGTCAG CTTTCACCGC CTGCTGTACC CCAAGGCACC GGCCTCGCGG
CTGCGCGCGG CGCTGCGCGG CGTGCTCGAA GAACGCCTGC TCGACGACCC CGACCTGGTG
CACGTGGCGC TGGCGCCCGA CGCCCACGCC GGCACCGAAT GCTGGGTCGC GGTCACCGAC
CGGGCCTGGC TGGCCATCCA GATCGAGCTG ATCGAGCGCA CCGGCCGCGC GGTCGACCGC
GTCATCTGCG CCGCCAGCCC CGCGGCCGAG GGCAGCGTCG GCGAACTCGA CGTGCAGACC
CTCGCCAGCG GCGTCGGCGA AGCCGGCAAC GAACTGGCCG GCGTCACCTT CAGCAGCGCC
GAGGGCGTCG CCTGCTGGCC CTGGGACACC CAGACCCGCC CCGGCGGCCT GGCCACCGCG
CTGCTGCCCA GCCCGCTGCC GGCCGAACTG CGCTGCAGCG CCAGCCCGGC CTTCGTGCTG
GCCACCGAGG CCTGGCTCGG CCGGCCGGTG GCGGTGCGCA GCCAGGCCCA GCGCCTGCTG
GCCGCCGCAC ACGGCGGCTG GAACCTGCGC CAGTTCGATC TGGCCCCGCG CCACCGCGGC
GCCACCCTGC TGCGCGATGC CTGGACGCAA CTGCGCACGC CCGCGTGGCG GCCCGCGCGC
TGGGGCCTGG TCGGCCTGCT GGCCGCGCAG CTGATCGGCC TGAACGCCTG GGCCTGGATG
CAGCGCAGCG AACTGCAGGA GCGCCGCACC GCCATGACTA ACCTGATGCG CAGCACCCAT
CCGCAGGTGC GCGCCATCCT CGACGCGCCA CTGCAGATGC AGCGCGAGAA CGAGGCCCTG
CGCGCCGCCG CCGGCCGCGC CGGTGACACC GACCTCGAAC CGATGCTGCA AGCCGCCGCC
AGCGCCTGGC CCGACAACCT CGCGGTGCAG ACGCTGCGCT ACGAAAACGC CCAGCTCAGC
CTCGGCGCCA CGCAGCTCGG TGCCGAACAG ATCGAGCGCC TGCGCAGCAG CCTGCAGCCG
GCTGGCTGGC GGGTCGAAGG TGGCGCCGGC CTGCTGACGC TGCGCCGTGG CAGCGCACCC
GCCGCCAACC CGGGCGGCCA GCCATGA
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| Protein sequence | MSLLIVQLPP RNRLGANAAG STAPAPAELA YVLSADGQSV DGEGRCAAAL LPRATSLSVV
MAGADVSFHR LLYPKAPASR LRAALRGVLE ERLLDDPDLV HVALAPDAHA GTECWVAVTD
RAWLAIQIEL IERTGRAVDR VICAASPAAE GSVGELDVQT LASGVGEAGN ELAGVTFSSA
EGVACWPWDT QTRPGGLATA LLPSPLPAEL RCSASPAFVL ATEAWLGRPV AVRSQAQRLL
AAAHGGWNLR QFDLAPRHRG ATLLRDAWTQ LRTPAWRPAR WGLVGLLAAQ LIGLNAWAWM
QRSELQERRT AMTNLMRSTH PQVRAILDAP LQMQRENEAL RAAAGRAGDT DLEPMLQAAA
SAWPDNLAVQ TLRYENAQLS LGATQLGAEQ IERLRSSLQP AGWRVEGGAG LLTLRRGSAP
AANPGGQP
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