Gene Lcho_3423 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3423 
Symbol 
ID6161876 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3805896 
End bp3806879 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content72% 
IMG OID641666198 
Productgeneral secretion pathway protein K 
Protein accessionYP_001792446 
Protein GI171060097 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3156] Type II secretory pathway, component PulK 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0000677151 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCACCGCC AGCGCGGCGC CGCGCTGCTG ACCGCGATGA TCATCGTCAC GCTGATCGCC 
ACGCTGGCCA GCGGCATGGT CTGGCAGCAG TGGCGCGCGG TGCAGGTCGA GGTGGCCGAG
CGCGGCCAGG TGCAGGCGCA GTGGATCCTC AACGGCGCGC TCGACTGGGC CCGGCTGATC
CTGCGCGAGG ACGGCCGCAC CAGCAACGTC GACCACCTCG GCGAACCCTG GGCGGTGCCG
CTGGCCGAGT CGCGGCTGTC GACCTTCCTG GCCGCCGACC GCAACGCCAG CACCGACGAC
GCGCCCGACG CCTTCCTGTC GGGCACCATC CGCGACGCTC AGGCGCGCTA CAACCTGCGC
AACCTGGTGC GCGACGGCAA GGTCCAGCCG GTCGAACTAC AGACGCTGCA GCGCCTGTGT
GCGCTGGTCG GCGTGAGCGA CAGCGTGGCG GTGCAGATCG GCGAGGCGCT GCGCCTGGCC
TCGCCCGGCA ACAGCGCCGA CGTCGGCGCC GACACCGGCG ACACCGGCCG ATCGGGCGGC
ATCCCGGTGC TGCCGGCCAG CATCGACGAC CTCGGCTGGC TCGGCCTGGA CGCCATCAGC
GTGCGGCGCC TGCAGCCCTT CGTGACCTGG CTGCCCGGCA TCACGCCGGT CAACCTGAAC
ACCGCGCCCA AGGAAGTGAT CGCCGCAGTC GTCAGCTCGA TCGACCTGGC CAGCGCCGAG
CGGCTGGTGC AGTCGCGCCT GCGCAACCAC CTGCGCCAGG TCGAGGACGC GCGCCCCCTG
CTCGGCCCCG GCGCCGGGCT GGACAGCGCC CGCATGAGCG TGAACACCCG CTACTTCGAG
GTCGATGGCA GCATGCGGCT CGAGCAGATG CTGGTCGCGC AACGTTCGCT GATCGAGCGC
ACGCCGCAGA CCCGCGAAGT CCGGGTCTTG CGCAGCGTGC GCATCCGGCC GACCGCAACT
GTTGGGACAT CACTCCAGCA ATGA
 
Protein sequence
MHRQRGAALL TAMIIVTLIA TLASGMVWQQ WRAVQVEVAE RGQVQAQWIL NGALDWARLI 
LREDGRTSNV DHLGEPWAVP LAESRLSTFL AADRNASTDD APDAFLSGTI RDAQARYNLR
NLVRDGKVQP VELQTLQRLC ALVGVSDSVA VQIGEALRLA SPGNSADVGA DTGDTGRSGG
IPVLPASIDD LGWLGLDAIS VRRLQPFVTW LPGITPVNLN TAPKEVIAAV VSSIDLASAE
RLVQSRLRNH LRQVEDARPL LGPGAGLDSA RMSVNTRYFE VDGSMRLEQM LVAQRSLIER
TPQTREVRVL RSVRIRPTAT VGTSLQQ