Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3423 |
Symbol | |
ID | 6161876 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3805896 |
End bp | 3806879 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641666198 |
Product | general secretion pathway protein K |
Protein accession | YP_001792446 |
Protein GI | 171060097 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3156] Type II secretory pathway, component PulK |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0000677151 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCACCGCC AGCGCGGCGC CGCGCTGCTG ACCGCGATGA TCATCGTCAC GCTGATCGCC ACGCTGGCCA GCGGCATGGT CTGGCAGCAG TGGCGCGCGG TGCAGGTCGA GGTGGCCGAG CGCGGCCAGG TGCAGGCGCA GTGGATCCTC AACGGCGCGC TCGACTGGGC CCGGCTGATC CTGCGCGAGG ACGGCCGCAC CAGCAACGTC GACCACCTCG GCGAACCCTG GGCGGTGCCG CTGGCCGAGT CGCGGCTGTC GACCTTCCTG GCCGCCGACC GCAACGCCAG CACCGACGAC GCGCCCGACG CCTTCCTGTC GGGCACCATC CGCGACGCTC AGGCGCGCTA CAACCTGCGC AACCTGGTGC GCGACGGCAA GGTCCAGCCG GTCGAACTAC AGACGCTGCA GCGCCTGTGT GCGCTGGTCG GCGTGAGCGA CAGCGTGGCG GTGCAGATCG GCGAGGCGCT GCGCCTGGCC TCGCCCGGCA ACAGCGCCGA CGTCGGCGCC GACACCGGCG ACACCGGCCG ATCGGGCGGC ATCCCGGTGC TGCCGGCCAG CATCGACGAC CTCGGCTGGC TCGGCCTGGA CGCCATCAGC GTGCGGCGCC TGCAGCCCTT CGTGACCTGG CTGCCCGGCA TCACGCCGGT CAACCTGAAC ACCGCGCCCA AGGAAGTGAT CGCCGCAGTC GTCAGCTCGA TCGACCTGGC CAGCGCCGAG CGGCTGGTGC AGTCGCGCCT GCGCAACCAC CTGCGCCAGG TCGAGGACGC GCGCCCCCTG CTCGGCCCCG GCGCCGGGCT GGACAGCGCC CGCATGAGCG TGAACACCCG CTACTTCGAG GTCGATGGCA GCATGCGGCT CGAGCAGATG CTGGTCGCGC AACGTTCGCT GATCGAGCGC ACGCCGCAGA CCCGCGAAGT CCGGGTCTTG CGCAGCGTGC GCATCCGGCC GACCGCAACT GTTGGGACAT CACTCCAGCA ATGA
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Protein sequence | MHRQRGAALL TAMIIVTLIA TLASGMVWQQ WRAVQVEVAE RGQVQAQWIL NGALDWARLI LREDGRTSNV DHLGEPWAVP LAESRLSTFL AADRNASTDD APDAFLSGTI RDAQARYNLR NLVRDGKVQP VELQTLQRLC ALVGVSDSVA VQIGEALRLA SPGNSADVGA DTGDTGRSGG IPVLPASIDD LGWLGLDAIS VRRLQPFVTW LPGITPVNLN TAPKEVIAAV VSSIDLASAE RLVQSRLRNH LRQVEDARPL LGPGAGLDSA RMSVNTRYFE VDGSMRLEQM LVAQRSLIER TPQTREVRVL RSVRIRPTAT VGTSLQQ
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