| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3422 |
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| Symbol | |
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| ID | 6161875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3805171 |
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| End bp | 3805869 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641666197 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_001792445 |
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| Protein GI | 171060096 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000633509 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCGCGC GCCGCCCCCC GTCCACGCCC CGTCCGATCC GGTCGGCACA GCGCGGCTTC
ACGCTGATCG AGGTGCTGGT CGCCCTGTTC ATCCTGGCGC TGATGGCCGG CATGGCGTGG
CAGGGTGTCG ACATGGTGGT GCGCAGCCGC GAGAGCACGC AGACTCGCAT GGACGCGCTG
CTGCGCCTGC AGTCGACCGT GGCGCAGTGG GAGGCCGACC TGCAATCGTG CATCGACACC
CAGCTGGTGC CGGGCCTGTC GTTCGACGGC GCCACCTTGC GGCTGACGCG GCGCCAGAAC
GAAGGCGTGC AGGTGATCGC CTGGACCGTG CGCGGCCAGC AGCTGCAGCG CTGGGCCGCG
CCACCGGTGC GCCAGGCCGA GCTGCTGCAG GAGGCCTGGA TGCGCAGCTA CCAGCTGCTC
GGCAACGAGC CCGGCAGCCT GACGATGCTC GAGCGCGTGT CGGGCTGGCA GCTGCACGTC
TTCCATAACA GCAGCAACGC CTGGAGCAAC GCCCAGTCCA GCGGCGACGT GGCCGCCAAG
GCCGCCTCAC CCGACCCGGC GACCGGCGAC GCCACCGCCG TGGTCGCCAC CGGCAACCGC
GAGCAGCTGC CCGACGGCGT GCGCATGCTG CTGACCTTCG CCGAGGGCGG CTCGGCGGTC
GGCACGCTGG TGCGCGACCT GCGGCTGGTG CACCCATGA
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| Protein sequence | MPARRPPSTP RPIRSAQRGF TLIEVLVALF ILALMAGMAW QGVDMVVRSR ESTQTRMDAL
LRLQSTVAQW EADLQSCIDT QLVPGLSFDG ATLRLTRRQN EGVQVIAWTV RGQQLQRWAA
PPVRQAELLQ EAWMRSYQLL GNEPGSLTML ERVSGWQLHV FHNSSNAWSN AQSSGDVAAK
AASPDPATGD ATAVVATGNR EQLPDGVRML LTFAEGGSAV GTLVRDLRLV HP
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