| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3416 |
|---|
| Symbol | |
|---|
| ID | 6162069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3800461 |
|---|
| End bp | 3801966 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641666191 |
|---|
| Product | threonine dehydratase, biosynthetic |
|---|
| Protein accession | YP_001792439 |
|---|
| Protein GI | 171060090 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00000175327 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTATC TGCAGCGCAT CCTGAACGCC AAGGTCTACG ACGTCGCGCG CGAGACCGAA
CTCGAACTGG CACGCAGCCT GTCGACCCGG CTGGGCAACA CGGTGCTGCT CAAGCGAGAG
GACAACCAGC CGGTGTTCAG CTTCAAGCTG CGCGGCGCGT ACAACAAGAT GGTGAACCTG
AGCGCCGAAC AGCGCGCTCG CGGCGTGATC TGCGCCTCGG CCGGCAACCA TGCCCAGGGC
GTGGCACTGA GTGCGCGGCG CCTCGGCTGC CGGGCCGTGA TCGTGATGCC GGTGACCACC
CCGGCGCTCA AGGTCGACGC CGTGCGCACC CTCGGCGGCG AGGTGCTGCT GCATGGCGAC
AGCTACTCCG ACGCCTACGA CCAGGCGGTG AAAGTGGCCG CGGACCAGGG CCTGACGTTC
GTGCACCCGT TCGACGACCC GGACGTGATC GCCGGCCAGG GCACCATCGG CATGGAGATC
CTGCGCCAGC ATCAGGGCCC GATCGACGCC GTGTTCGTCG CCATCGGCGG CGGCGGCCTG
ATCTCGGGCG TGGCGGCCTA TCTGAAGTCG GTGCGGCCGG GAATCAAGGT GATCGGCGTG
CAGACCACCG ACTCGGACGC GATGGCGCGT TCGGTCGAAG CCGGCAAGCG GGTGCGCCTG
ACCGATGTCG GGCTGTTTTC CGATGGCACG GCGGTCAAGC AGGTCGGCAA GGAGACGTTC
CGGCTGACGC GGGTGCTGGT CGACGAGTTC ATCCGGGTCG ACACCGACGC GATCTGCGCG
GCCATGAAGG ACGTCTTCCA GGACACCCGC TCGATCCTCG AGCCCGCCGG CGCGCTGGGC
GTGGCGGCGG TCAAGCAGTA CGTCGAGCGC ACCGGCTGCC GCGACCAGAC GCTGATCGCC
ATCACCTGCG GCGCCAACAT GAACTTCGAC CGGCTGCGCT TCGTCGCCGA GCGCGCCGAG
ATGGGTGAGG AGCGTGAAGC CCTGTTCGCC GTCACGATCC CCGAGGAGCG CGGTTCGTTC
AAGCGTTTCT GCGAGCTGAT CGGCCCGCGC AGCGTGACCG AGTTCAACTA CCGCATCTCC
GACGAGCAGA AGGCCCACCT CTTCGTCGGC CTGAGCACCC GCACGCACGG CGAATCGGCG
CAGATCGGCG AGCTGTTCCG CGGCCAGGGC TTCGACGCGA TCGACCTCAG CCACGACGAA
CTGGCCATCG ATCACATCCG CCACCAGGTC GGCGGGCGCT CGGAGCTGGC GGCCAACGAA
CGGCTGTTCC GCTTCGAGTT CCCGGAGCGG CCGGGGGCGC TGATGCGCTT CCTGTCGAGC
ATGCACCCGG GCTGGAACAT CAGCCTGTTC CACTACCGCA ACCAGGGCGC CGACTACGGC
CGCATCCTGG TGGGCATCCA GGTGCCCAAG GCGGATCGGT CCCGGTTCCG CCAATTTCTC
GACACGCTCG CGTATCCCTG CATCGAAGAG ACCGACAACC CGGTGTACCG TTTGTTTCTT
CGCTGA
|
|---|
| Protein sequence | MPYLQRILNA KVYDVARETE LELARSLSTR LGNTVLLKRE DNQPVFSFKL RGAYNKMVNL
SAEQRARGVI CASAGNHAQG VALSARRLGC RAVIVMPVTT PALKVDAVRT LGGEVLLHGD
SYSDAYDQAV KVAADQGLTF VHPFDDPDVI AGQGTIGMEI LRQHQGPIDA VFVAIGGGGL
ISGVAAYLKS VRPGIKVIGV QTTDSDAMAR SVEAGKRVRL TDVGLFSDGT AVKQVGKETF
RLTRVLVDEF IRVDTDAICA AMKDVFQDTR SILEPAGALG VAAVKQYVER TGCRDQTLIA
ITCGANMNFD RLRFVAERAE MGEEREALFA VTIPEERGSF KRFCELIGPR SVTEFNYRIS
DEQKAHLFVG LSTRTHGESA QIGELFRGQG FDAIDLSHDE LAIDHIRHQV GGRSELAANE
RLFRFEFPER PGALMRFLSS MHPGWNISLF HYRNQGADYG RILVGIQVPK ADRSRFRQFL
DTLAYPCIEE TDNPVYRLFL R
|
|---|
| |