| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3412 |
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| Symbol | |
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| ID | 6162419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3796165 |
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| End bp | 3797418 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641666187 |
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| Product | outer membrane protein (porin)-like protein |
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| Protein accession | YP_001792435 |
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| Protein GI | 171060086 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00000420831 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGACTG AACTCGCTGT CACCGCGCTC GCGCTTTCAT GTGCCTCCGC CTTCGCGCAG
GCGCCGGGCA CGCTCGAGGT CTATGGTCTG CTGGATGTCG GCATCAACCA CGTCACCGGC
ATCGCCGGCG GCAGCAAGAC GAGCCTGGCC AGCGGCATCA TGGACGGCTC GCGCCTGGGC
GTGCGGGGCA ACGAGGACAT CGGCGGCGGC TGGCGCAGCC TGTTCGTGCT CGAGAGCCGG
GTCGAGGTCA ACAGCGGCAC CTTCTCCAAC CGGCCGGCCT CGGGCAGCCA GTTGCCCGAT
CGCCTGGCCC AGGCGGGCTT GCTGAGTCCG TCGGCCCCCC TCCCGCAACT GCCGGTCACG
GGTGCGGCCA ATGCGATCGG CAGCCGCATC GGCGTGAACC TGGCCAACAG CATCTGGGAC
CGGCAGGTCT ATGTCGGTCT GGTGACGCCG GTCGGCGCCC TGCTGGCCGG CCACCAGTAC
ACGCCGGCCT ACGAGGTGTT CGCCACCTTC GACGCCACGC ACACCTCGTC GAGCCTGTCG
GCCGGCCAGA TCAACTCGAC GCCGACCGGC GTGGACATCC GTGCCGACAA CGCGCTGGCC
TATCGCATCC AGTCCGGTGG CCTGACGGCC TCGCTGATGC GCACCTTCGA CGGCGGCACG
ATCTCGAAGG CCAACCGCCT GATGGGCCTG GGCGTCACCT ACAAGAGCGA GCGGTTTTCG
GTCGGCGCGG GCTACAACAC GCACAACAAC GAGCTGGGCC AGACGGCGCT CAAGTCCGGC
CTGGTGGGGG CTTCGCTCGC CCTGGGGCCG GGCACGCTGT CGGGCCTGGC GGCGGCCATC
AAGGACGATC ATCCCGCGGG GCTGTCGACC CTGAGCGCCC AGTTGCAGGC CGCACCGACG
CCCACACCGG CCTTCGTGGC CGACGCCATT CAAGCCGCTT TCGTCACCGG CCTGAAGCAG
GATGCCCGCC TGTTCAACAT CGGCTACACG CTCGTGACCG GGGCGTTGAC GTCCACCGTC
GCCTACTCCA GGTACGACGA CCGCCGGTCG TTCGACGCCG ATGTCTCGTC CTACGGCGTC
ACCTACAGCT ACGCGCTGTC CAAGCGCACC GACATCAACG CGGTGCTGAC CCGTTTCGAG
AACAAGGGCC TGGCGCAGGC GGCGCCGGGG GGGGGCGGGT TTCTGGGCGG TTTCACGGCC
ACCGCCGGGA CCGACTCGAA CAACGTCGCG CTGGGCATCC GCCATCGTTT CTGA
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| Protein sequence | MKTELAVTAL ALSCASAFAQ APGTLEVYGL LDVGINHVTG IAGGSKTSLA SGIMDGSRLG
VRGNEDIGGG WRSLFVLESR VEVNSGTFSN RPASGSQLPD RLAQAGLLSP SAPLPQLPVT
GAANAIGSRI GVNLANSIWD RQVYVGLVTP VGALLAGHQY TPAYEVFATF DATHTSSSLS
AGQINSTPTG VDIRADNALA YRIQSGGLTA SLMRTFDGGT ISKANRLMGL GVTYKSERFS
VGAGYNTHNN ELGQTALKSG LVGASLALGP GTLSGLAAAI KDDHPAGLST LSAQLQAAPT
PTPAFVADAI QAAFVTGLKQ DARLFNIGYT LVTGALTSTV AYSRYDDRRS FDADVSSYGV
TYSYALSKRT DINAVLTRFE NKGLAQAAPG GGGFLGGFTA TAGTDSNNVA LGIRHRF
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