Gene Lcho_3411 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3411 
Symbol 
ID6162418 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3795198 
End bp3795926 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content72% 
IMG OID641666186 
Producthypothetical protein 
Protein accessionYP_001792434 
Protein GI171060085 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00000260975 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGGCCGCGG CGGTCTTGCT GTGGGGCTGC GCGCAGGTGC CGGGTGTGCC GCCAGAGCCG 
CCGCAGCCCC GCCCCGACCA GGTGCAGGCC CTGCAGGCGC AAGGCCCGGC CTGGCGCGGC 
GTGCCGTTTC CGGGCAAGCG CAGCACCCAT TACCGGCCGC TCCAGCATGA CGGCCGCACG 
GCGCTGCATG CGCGCGCCGA CACCTCGGCC AGCATGTGGC GCCGGCCGGT CAAGGTCGAT 
GCGCACGACC TCGGGCGGGT GCGCTTCAGC TGGAACGTGC CGCGGCTGAT CGAGCACGCC 
GACCTGTCGG ATCGCGATGC CGAGGACACG CCGGTGCGCA TCGTGCTGGC CTTCGAGGGC 
GATCACGCCC GCCTGTCGCT GCGCAACCGC ATGATGTTCG ACCTGGCCGA AACCCTCACC 
GGCGAGCGGC CGCCCTACGC CACGCTGATG TACGTGTGGG ACACCCGCGC GGCGGTCGGC 
AGCGTGATCC CGGCAGCCCG CACCGACCGG GTGCGCAAGC TGGTGGTCGA GTCGGGCGCC 
CAGCGGGTGC AGCGCTGGCT GAGCTACGAG CGCGACGTGG TGGCCGACTA TCGCCACATG 
TTCGGCGAAG ACCCCGGGCC GCTGGTCGGT GTCGCGTTCA TGACCGACAG CGACAACACC 
GGCAGCCAGA TCGACGCCTA TTACGGCGAC ATCGAGCTGA TCGGCAAGGC CGGGCAGCCG 
CTGTTCTGA
 
Protein sequence
MAAAVLLWGC AQVPGVPPEP PQPRPDQVQA LQAQGPAWRG VPFPGKRSTH YRPLQHDGRT 
ALHARADTSA SMWRRPVKVD AHDLGRVRFS WNVPRLIEHA DLSDRDAEDT PVRIVLAFEG 
DHARLSLRNR MMFDLAETLT GERPPYATLM YVWDTRAAVG SVIPAARTDR VRKLVVESGA 
QRVQRWLSYE RDVVADYRHM FGEDPGPLVG VAFMTDSDNT GSQIDAYYGD IELIGKAGQP 
LF