| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3408 |
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| Symbol | |
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| ID | 6162415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3790895 |
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| End bp | 3793195 |
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| Gene Length | 2301 bp |
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| Protein Length | 766 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641666183 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_001792431 |
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| Protein GI | 171060082 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000649652 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCCTGC GGATCGTCGC CTGGGTCGCG GGCGTGGGAC TGGCCGGCGC GATGGCCGCC
GCCCTGCTGC TCGGCGTTGC CCTGGCGACA GCCTATCCCA ACCTGCCCAA GATCGACAGT
CTGATCGACT ACAGGCCCAA GCTGCCGATG CGCATCATCT CGGCCGAGGG CACGCTGCTG
GGCGAGTTCG GCGAGGAGCG GCGCAACTAC CTGTCGATCC GGGAAATCCC GAAGGTCATG
CAGGACGCCG TGCTGGCGAT CGAGGACTCG CGCTTCTACG AACACGGCGG CATCGACTAC
CGCGGCGCCC TGCGCGCCGC GCTCGGCAAT CTGCGCGAGG CACGCAGCCA GGGCGCCTCG
ACGATCACGA TGCAGGTCGC GCGCAACTTC TACCTTTCGA CCGAAAAGAC GCTCACCCGC
AAGATCTACG AGATCCTGCT GTCGCTCAAG ATCGAAAGCC AGCTGAGCAA GCAGCAGATT
CTCGAGGTCT ACATGAACCA GATCTACCTC GGACAACGCG CCTACGGGTT TGCGGCGGCC
AGCGAGATCT ATTTCGGCAA GCCGCTCAAG GACATCACGG TTGCCGAGGC GGCGATGCTC
GCCGGCCTGC CCAAGGCGCC GTCGGCCTAC AACCCGATCA GCAACCGCAC GCGCGCCGAA
CAGCGCCAGC GCTACATCAT CGAGCGCATG CGCGAAAACG GCTTCATCTC GGCCGAGCAG
CACGACCAGG CGCTGGCGCA ACCCCTGAAG TACCACCCGG CGCGCAGCAA TTCATCGCAC
GCCGGCTATG TGGCGGAAAC CGCCCGGCAA CTGATCTTTG CGCAGTATGG CGACGATGCC
TATACCCGCG GCCTGAATGT CCACCTGTCG GTACGGGCCG AGGACCAGGC GGTGGCCTAC
CGGGCCCTGC GGCGCGCCAT CCTGGATTTC GAGCGCCGCA AGACCTATCG CGGCCCGGAG
GCCTACGTCG ATCTGCCCAA GGATCAGCAG GGCATCGACA CCCGCGCCGC GGAGGCGCTC
GAAGACCATC CCGACAACGA CGAACTGCGC AGCGCCGTGG TCACCCAGGC CGCACCCAAG
AAGGTGACCG CCTTGCTGCA AAGCGGCGAG AGCATCTCGA TCACCGGCTC CGGGCTGCGC
AATGTCAGCA CGGCGCTGTC GGACAAGGCG CCGCCGAAGG TGCAGATTCG TCCAGGCGCC
GTCATCCGGG TCAGCAAGGA CAGCCGCAAC GAATGGTCGA TCGGGCAACT GCCCGAGGTC
GAGGGCGCGT TCGTCTCGCT CGACCCCTAT ACCGGCGAAA TCCGCGCGCT GGTGGGCGGA
TTCGACTACG CCAAGAACAA GTTCAATCAC GTCACCCAGG CCTGGCGACA GCCCGGCTCG
AGTTTCAAGC CGTTCATCTA TTCGGCCGCA CTCGAAAAAG GCATCGGCCC CGCCACGGTG
GTGGACGATG CCCCCCTGTT CTTCGACGCC GACGCCACCG GCAGCCAGCC GTGGGAACCG
AAGAACTACG ACGGCCAGTT CGAAGGCCCG ATGTCGCTGC GACGCGGGCT GGCCAAATCG
AAGAACATGG TGTCGATCCG CGTGCTCGAG CACGTCGGCC CGGCGTTCGC GCAGGACTGG
GTTTCGCGCT TCGGCTTCGA GCCCGAAAAA CACCCGGCCT ACCTGACGAT GGCGCTCGGC
GCCGGCACCG TCACGCCGAT GCAGATGGCG AGCGCCTACT CGGTGTTTGC CAACGGCGGC
CATCGCGTCA ATCCGATGCT CATCACGCGC GTCACCGACA ACCGCGGCCG CATCCTGGCG
CAGACGCAGC CGGTGCCGCT GGACGACAGC ATGCGCGTCA TCACGGCACG CAACGCCTTC
ATGATGGACA GCCTGCTGCA GGAGATCACG CGCAGCGGCA CGGCGGCGCG GGCGCAGTCG
ACCCTGAAAC GCCCCGACCT GTACGGCAAG ACCGGCACCA CCAACGACTC GAACGACGCC
TGGTTTGCCG GCTTCCAGCC GAGCCTGGTG GCGGTGGTCT GGGTCGGCTA CGACCAGCCG
CGCAAGCTCG GTGACCGCGA GACCGGCGGC GGCCTGGCGC TGCCGGTGTG GATCGAATAC
ATGGCGCAGG CGCTGCGCGG CGTCGCCGTC AACGAGATCG CACCACCCGA GGGCGTAACC
AACGTCGGCG GCGAGTGGTA CTACAGCGAA AACGCCAACG GCGAAGGCGT CTCGACACTC
GGCATCGCCA GCCACGCGCC CGACGCGGCA TCGGCCCCCA CCGAAGAGCG CAAGAGCATC
CTCGACCTGT TCCGGAACTG A
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| Protein sequence | MILRIVAWVA GVGLAGAMAA ALLLGVALAT AYPNLPKIDS LIDYRPKLPM RIISAEGTLL
GEFGEERRNY LSIREIPKVM QDAVLAIEDS RFYEHGGIDY RGALRAALGN LREARSQGAS
TITMQVARNF YLSTEKTLTR KIYEILLSLK IESQLSKQQI LEVYMNQIYL GQRAYGFAAA
SEIYFGKPLK DITVAEAAML AGLPKAPSAY NPISNRTRAE QRQRYIIERM RENGFISAEQ
HDQALAQPLK YHPARSNSSH AGYVAETARQ LIFAQYGDDA YTRGLNVHLS VRAEDQAVAY
RALRRAILDF ERRKTYRGPE AYVDLPKDQQ GIDTRAAEAL EDHPDNDELR SAVVTQAAPK
KVTALLQSGE SISITGSGLR NVSTALSDKA PPKVQIRPGA VIRVSKDSRN EWSIGQLPEV
EGAFVSLDPY TGEIRALVGG FDYAKNKFNH VTQAWRQPGS SFKPFIYSAA LEKGIGPATV
VDDAPLFFDA DATGSQPWEP KNYDGQFEGP MSLRRGLAKS KNMVSIRVLE HVGPAFAQDW
VSRFGFEPEK HPAYLTMALG AGTVTPMQMA SAYSVFANGG HRVNPMLITR VTDNRGRILA
QTQPVPLDDS MRVITARNAF MMDSLLQEIT RSGTAARAQS TLKRPDLYGK TGTTNDSNDA
WFAGFQPSLV AVVWVGYDQP RKLGDRETGG GLALPVWIEY MAQALRGVAV NEIAPPEGVT
NVGGEWYYSE NANGEGVSTL GIASHAPDAA SAPTEERKSI LDLFRN
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