Gene Lcho_3406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3406 
Symbol 
ID6162838 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3788838 
End bp3789476 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content66% 
IMG OID641666181 
Productfimbrial assembly family protein 
Protein accessionYP_001792429 
Protein GI171060080 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3166] Tfp pilus assembly protein PilN 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0681762 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCTGA TCAACCTCCT GCCGCACCGG GAAGAGCGTC GCAAGCGTCG CAAGCAGGCG 
TTTTTTGCCG GGCTGTTCCT GTCTGCGCTG ATCGGCGCCG CGCTGGCGGG CGTCGGTTAT 
CTGGCGCTGA TGGAAATGAT GGGCACCCAG CAGTCGCGCA ACGAGTTCCT GCAGACCGAG 
ATCCGGCGCC TCGAGATGCA GATCAAGGAC ATCGCCTCGC TCAAGGGCGA GATCGAGGCG 
CTCAAGGCGC GCCAGAAGGT GGTCGAGGAT TTCCAGATCG ACCGCAACAT GCCCGTGCAC 
ATGCTCAACG AGCTGGCCGC ACGCACGCCT GAAGGCGTGT ACCTGACGCT GGTCAAGCAG 
GAAGGCCAGG CCGTGCTGGT CAGCGGCATC GCCCAGACCA ACGAGCGGGT CTCCGAGTTC 
CTGCGCAACA CCGCCTACAA CTCGGCCTGG CTGGAGCGGC CCGAGCTGGT CGAGATCAAG 
GTGACTGCCG CGACGCCCAA CGCCCGCGAC CAGAAGCGCC TGTTCGATTT TTCGGTGCGC 
CTGACGCTCA AGCGACCGCA GGACCTGGAG GCTGCCGCTG CGGCCGCGTC AGGGCCGGCC 
GGTGCCCTGG TGCCTGCGCG CGCCGCGTCG GCGTCTTGA
 
Protein sequence
MILINLLPHR EERRKRRKQA FFAGLFLSAL IGAALAGVGY LALMEMMGTQ QSRNEFLQTE 
IRRLEMQIKD IASLKGEIEA LKARQKVVED FQIDRNMPVH MLNELAARTP EGVYLTLVKQ 
EGQAVLVSGI AQTNERVSEF LRNTAYNSAW LERPELVEIK VTAATPNARD QKRLFDFSVR 
LTLKRPQDLE AAAAAASGPA GALVPARAAS AS