| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3404 |
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| Symbol | |
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| ID | 6162836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3787551 |
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| End bp | 3788111 |
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| Gene Length | 561 bp |
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| Protein Length | 186 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641666179 |
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| Product | pilus assembly protein PilP |
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| Protein accession | YP_001792427 |
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| Protein GI | 171060078 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3168] Tfp pilus assembly protein PilP |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.392117 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCCCCC GACGCCTGAC GCTGGCGGCG CTGGCCACCG GGCTGGCCGC CAGCACGCTG
TTGAGCGGCT GCGGCAACCC GCATGAAGAA CTGCAGTCTT GGATGGACCA GCAGCGCCGC
GAGGCCAAGC CGCGTGTGCC GCCGCTGCTG CCGCCACGCA AGTTCGATCC CCAGCCCTAC
ACCGCCATCA GCGTGGTCGA GCCCTTCAGC GGTCAGAAGC TGCAGGTGGC GATCAAGCAG
GAGACCCGTC AGCCCAACTC GCTGCTGGCG GCCGAGCTGA ACCGCCGCCG CGAACCGCTC
GAAGCCTACC CGCTCGACGC GCTGACGATG GTGGGCAGCG TGGTGCGCAG CGGCCGCCCC
TATGCGCTGC TGAGCGCGGA CAACCTGCTC TACCAGATCA AGGTGGGTGA CTACATCGGC
CAGAACTACG GCCGCATCAC CCGCATCACC GAAACCGAAA TTTCGTTGCG AGAAATCGTG
CAAGACGCCA TCGGAGAGTG GGTCGAGCGC ATGAGCACGC TCACGCTCCA GGAGCGTGGT
GCCCAGGAGA AGAGTCGATG A
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| Protein sequence | MLPRRLTLAA LATGLAASTL LSGCGNPHEE LQSWMDQQRR EAKPRVPPLL PPRKFDPQPY
TAISVVEPFS GQKLQVAIKQ ETRQPNSLLA AELNRRREPL EAYPLDALTM VGSVVRSGRP
YALLSADNLL YQIKVGDYIG QNYGRITRIT ETEISLREIV QDAIGEWVER MSTLTLQERG
AQEKSR
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