| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3384 |
|---|
| Symbol | |
|---|
| ID | 6163368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3762165 |
|---|
| End bp | 3762785 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641666159 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001792407 |
|---|
| Protein GI | 171060058 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02247] Epoxide hydrolase N-terminal domain-like phosphatase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAACACC TGATCTTCGA TTTCGGCGCC GTGGTGTTCC AGTGGCAGCC GGCCGCCTTG
CTGGCGCGTG TGCTGCCGCA ACGCGCGCAT GACGAGGCCA GCACGCAGGC GCTGCAACGC
GATTTTTTCC AGGGTTACGG CGGCGCCTGG GGCCGCTACG ACCGAGGCAC CATCGAACGC
CCCGAGCTCA TCGAGGGGCT GGTGGCGCAG ACCGGTCTGC ACGCCGACGA GGTGGCGGCG
GTGGTCGACG CGGTGCCGGC CGAGCTGGCG CCGATCGGGC CCACCGTCGA GCTGCTGGGC
CGCTTGCGCG ATGCCGGCCA CCGGCTGTTC TACCTCTCCA ACATGCCTCG CCCGTTGGCA
ACGCATCTGG AGCAGTCGCA TCACTTCCTG AGCTGGTTCG ACGACGGCGT GTTCTCCGGC
CGCGTGCAGC TGAGCAAACC CGAGCCGGCG ATCTTTGTGC ACGCGCTCGA AAGGTTCGGC
GTGCCCGCGG GCGACTGCAT CTTTCTCGAC GACCACCCGG CCAATGTCGA GGCGGCGCGC
GCGCTCGGCA TCGACGCCGT GCTGTTCAGC GACGCGGCCC AGGCCGAGGC CGAGCTGCGC
GAGATGGGCG TGCTGGCCTG A
|
|---|
| Protein sequence | MKHLIFDFGA VVFQWQPAAL LARVLPQRAH DEASTQALQR DFFQGYGGAW GRYDRGTIER
PELIEGLVAQ TGLHADEVAA VVDAVPAELA PIGPTVELLG RLRDAGHRLF YLSNMPRPLA
THLEQSHHFL SWFDDGVFSG RVQLSKPEPA IFVHALERFG VPAGDCIFLD DHPANVEAAR
ALGIDAVLFS DAAQAEAELR EMGVLA
|
|---|
| |