Gene Lcho_3379 details

Gene Information

• Locus tag: Lcho_3379
• ID: 6161079
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3755018
• End bp: 3756973
• Gene Length: 1956 bp
• Protein Length: 651 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641666154
• Product: putative phytochrome sensor protein
• Protein accession: YP_001792402
• Protein GI: 171060053
• COG category: [K] Transcription; [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG3284] Transcriptional activator of acetoin/glycerol metabolism

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 56
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATCGAAC CCCACCAGCG CCAGATGGCG CATGCGCATG CCGTGATGGC ACGCGGCAGC 
GCGATGCCAC CCGACGGCAT GCCATCCGCC GACATCCTCG ACAGCTGGGT GCGCTGCATG 
CAGACCGGAC TCGACGCCCG CGCCACCACC TCGATCGAGG TGGTCGAAGC CGCCGACCTG 
GCCGAACGGC GCGAGCGTGC CGGCGTGACG CGCCGGCTGG CACGGGCCGA GCTCGAGACG 
CTGGCGCAGC AGATCGCCGG CTCGAACTTC CTGCTCGCCT TTGCCGACCA GGAGGGCGTG 
ATCCTCGACC TCTACGCCGA CAACCGCTTC ACGATGAACG GCCGCGGCGC CGGCATCGTG 
GCGGGCAGCT GCTGGACCGA GGCGCTGTGC GGCACCAACG GCCTGGGCAC CGCGCTGGCC 
ACCGGCCGCT CGGTGGCGGT GACGGGGCTG GAGCACTACC TGCTGCAGCT CGGCGAGATC 
TCCTGCACCG CCGCGCCGGT GCGCGACGCG CTGGGCGACA TCGTCGGCGT GCTCGACGCC 
TCGTCCTACT TCGAATCACG CCAGCGCCAC ACCCAGGCGC TGGTGCAGAT GGCCGCCACC 
CACATCGAGA ACGGCCTGCT GGTGCATCAG ATGCGCGCGC GGCTGGTGCT GGCCGTGCAC 
CCGCGGCCGG AGTTCATCGG CACGCTCAGC GCCGGCCTGC TGGCCTTCGA CACCGAGGGC 
CGTGTGTGCG CCTTCAACAG CCGTGCAGCG AGTCTGCTGA CGGGGCTCGA ACTCGCGCGA 
GGCAGCGCCT TCGACCTGCT GTTCGACGAA CCCTTCGAGC GTTTCGTCGC CAAGCTGCGC 
CACTCCGGCC AGCTGCGCCT GCGCGATGCG CTGGGCAGCA TCGTCTATGC CGCACCGGTG 
CACCTGCCAG CCAGCCATCC GGTGCCTCGT GTGCCCGGCC TGGTCGTCCA TCCGACACGA 
GCGCGCGGTG CACCGGCACA CGAGCGACCG GCGCGGACCA GCCATGCCAC GGCGGACAGC 
GTCGACCCGC CACCCGCTTT CGTGGCCAAC TTCGTGGCCG GTTTCGTGGC CGACGACCCC 
GCGGTGCGCG CCGCCATGCG CACGGTGGCG TCGGCGGTGC GGCTGCGGGT GCCGATCCTG 
ATCCACGGCG AGACCGGCAC CGGCAAGGAA CTGCTGGCGC ACCACGCCCA TGCCGTGAGC 
GGCCGACAGG GCGAGTTCGT GGCGGTCAAC TGCGGCGCAC TCCCGGCCGA GCTGTTCGAG 
GCCGAGCTGT TCGGCTACGC CGGCGGCTCG TTCACCGGCG CGCGACGCGA AGGCAGCGCC 
GGCCTGATCG CCCGCGCCGA CGGCGGCACG CTGCTGCTCG ACGAACTCGG CGAGCTGCCG 
CTGGCGCTGC AGGCGGCGCT GCTGCGTTTT CTGGACGACC AGCGCGTGCG CCCGGTCGGC 
AGCACCACCA CGCGCCAGGT CGACGTGCAG CTGCTCGCCG CCACCCACGT CGACCTGGAG 
GCCGAGGTGC AGGCGCGGCG CTTCCGGGCC GACCTGCTGT ACCGGCTCGA CACCGTGCGG 
GTCGACCTGC CACCGCTGCG CCGGCGCAGC GACTTCGGTG CCATCGCGCA CACCGTGCTG 
CAGGCCATCG ACCGCAGCGC CCGCATCGGC GACGACGCGA TCGCGGCGCT CTCGCAGCAC 
GCCTGGAGCG GCAACATGCG CGAGCTGCGC TCGGTGCTGA CGCGGGCGTT GCTGGCGTGC 
GAGAGCAGCC GCATCGAACG CGCCGACATC GAACAGGTGC TGCCGGCGCT GGCGCCATCG 
GCCGCGCCGA TCTCGGTGCT GCAGCAAGGC GCGCTGGCGC AGGTGCTGCG CGAGTTCGAG 
CGCACCGGCC ACAGCGTCAG CCAGACCTCG CGCAACCTGG GCGTGTCGCG CACCACGGTC 
TATCGCTACC TGCGCGAAGG CAGCGCGGCG CGCTGA 

 

Protein sequence

MIEPHQRQMA HAHAVMARGS AMPPDGMPSA DILDSWVRCM QTGLDARATT SIEVVEAADL 
AERRERAGVT RRLARAELET LAQQIAGSNF LLAFADQEGV ILDLYADNRF TMNGRGAGIV 
AGSCWTEALC GTNGLGTALA TGRSVAVTGL EHYLLQLGEI SCTAAPVRDA LGDIVGVLDA 
SSYFESRQRH TQALVQMAAT HIENGLLVHQ MRARLVLAVH PRPEFIGTLS AGLLAFDTEG 
RVCAFNSRAA SLLTGLELAR GSAFDLLFDE PFERFVAKLR HSGQLRLRDA LGSIVYAAPV 
HLPASHPVPR VPGLVVHPTR ARGAPAHERP ARTSHATADS VDPPPAFVAN FVAGFVADDP 
AVRAAMRTVA SAVRLRVPIL IHGETGTGKE LLAHHAHAVS GRQGEFVAVN CGALPAELFE 
AELFGYAGGS FTGARREGSA GLIARADGGT LLLDELGELP LALQAALLRF LDDQRVRPVG 
STTTRQVDVQ LLAATHVDLE AEVQARRFRA DLLYRLDTVR VDLPPLRRRS DFGAIAHTVL 
QAIDRSARIG DDAIAALSQH AWSGNMRELR SVLTRALLAC ESSRIERADI EQVLPALAPS 
AAPISVLQQG ALAQVLREFE RTGHSVSQTS RNLGVSRTTV YRYLREGSAA R