| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3346 |
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| Symbol | |
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| ID | 6160711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3723544 |
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| End bp | 3724686 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641666121 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001792369 |
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| Protein GI | 171060020 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACCA CCTCATTGCG CCTGGGCTGC ATCGCCGCAG CCTGTTTCGC CCTGTCCGCG
CACGCAGCGC AGCCCCTCGT CGTCAAGATC GGCCACGTCG CCGCGCTCAG CGGCCCCGCC
GCGCACCTCG GGCATGACAA CGAGAACGGC GTGCGGATGG CGATCGAGGA ACTGAACGCC
AAGGGCGTGC AGATCGGCGG CCGTCCGGCC CGCTTCGAGC TGCTCGCCGA GGACGACGCC
GGCGACCCGA AGCAGGGTAC TGCCGCCGCG CAGAAGCTCG TCGACAACAA GGTCAACGGC
GTCGTCGGCC ACCTGAACTC GGGCACCGCG ATTCCCGCGG CGCGGATCTA TGCCGACGCC
GGCATCGCGC AGATCGCGCC GTCGGTGACG AACCCGCAGT ACACCCGCCA GGGCTTCAAG
ACGACGTTCC GGATGGTGGC CGACGACGCC CAGCTCGGCG GTGCACTCGG CCGCTACGCG
GTGCAGACGC TGAAGGCGAA GACCATCGCG GTCATCGACG ACCGCACCGC CTACGGCCAG
GGCGTGGCCA GCGAGTTCGA GAAAGCCGCC AAGGCCGCCG GCGCGACGAT CGCCAAGCGC
GAGTTCACCA GCGACAAGTC GACCGACTTC ACCAGCATCC TGACCGGCAT CAAGGCGGCC
AAGCCCGACG TCATCTTCTA CGGTGGCATG GACGGGGTCG CCGGCCCGAT GCTGCGGCAG
ATGAAGCAGC TCGGCATCCG GGCGAAGTTC GTCGGCGGCG ACGGCGTCTG CACCGGCGAG
CTGCCCAAGC TCGCCTCGGG CCAGATGACC GACGGCCAGG TCGTCTGCGC GATCGCCGGC
GGCGTCGACG CGGCGCAGCG GCCGGCGTTC GACAAGTTCA AGGCCGACTT CAAGAAGAAG
TTCGGCGCCG AGGTCCAGAT CTACTCGCCC TACACCTACG ACGCAACCAA GGTGATGGTC
GAGGCAATGG TCAAGGCGAA GTCTGCCGAC CCGGCCAAGT ACCTGCCGGA GCTGCAGAAG
ATCAGCTACC CCGGCGTCAC CGGCACCATC GCGTTCGACG AAAAGGGCGA CATCAGGAAC
GGTGCGCTGA CGCTCTACAC CTTCAAGGGT GGCCAGCGCG AGGAACTCGG CATCGTTCGC
TGA
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| Protein sequence | MTTTSLRLGC IAAACFALSA HAAQPLVVKI GHVAALSGPA AHLGHDNENG VRMAIEELNA
KGVQIGGRPA RFELLAEDDA GDPKQGTAAA QKLVDNKVNG VVGHLNSGTA IPAARIYADA
GIAQIAPSVT NPQYTRQGFK TTFRMVADDA QLGGALGRYA VQTLKAKTIA VIDDRTAYGQ
GVASEFEKAA KAAGATIAKR EFTSDKSTDF TSILTGIKAA KPDVIFYGGM DGVAGPMLRQ
MKQLGIRAKF VGGDGVCTGE LPKLASGQMT DGQVVCAIAG GVDAAQRPAF DKFKADFKKK
FGAEVQIYSP YTYDATKVMV EAMVKAKSAD PAKYLPELQK ISYPGVTGTI AFDEKGDIRN
GALTLYTFKG GQREELGIVR
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