Gene Lcho_3326 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3326 
Symbol 
ID6163713 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3702137 
End bp3703780 
Gene Length1644 bp 
Protein Length547 aa 
Translation table11 
GC content68% 
IMG OID641666101 
Productalpha amylase catalytic region 
Protein accessionYP_001792349 
Protein GI171060000 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCGC CCAACAACGG CTGGTGGCGC GGCGGGGTGA TCTACCAGAT CTACCCGCGC 
AGCTACCAGG ACAGCAACGG CGACGGCATC GGCGATCTGC CGGGCATCAC CCGGCGGCTC
GACCACATCG CGGCTCTCGG CGCCGACGGC ATCTGGCTGT CGCCGTTCTT CAAGAGCCCG
ATGAAGGACT TCGGCTACGA CATCAGCGAC TACAACGATG TCGACCCGAT GTTCGGCACG
CTGGCCGACT TCAAGGTGCT GGTCGACCGC GCGCACGCGC TGGGCCTGAA GGTCATGATC
GACCAGGTCT ATTCGCACAC CGCCGATGTG CACCCGTGGT TCGTCGAAAG CCGTTCGAGC
CGCACCAATG ACAAGGCCGA CTGGTACGTG TGGGCCGATC CGCTCGACGA CGGCAATCCG
CCCAACAACT GGCTGTCGAT CTTCGGCGGC AGCGCCTGGC AATGGGACAC GCGGCGCAGG
CAGTACTACC TGCACAACTT CCTGACCAGC CAGCCCGACC TCAACTTCCA TTGCCCGCAG
GTGCAGGAAG CGGTGCTGGC CTCGGTCAAG TTCTGGTGCG AGTTCGGGGT CGACGGCTAC
CGGCTCGACG TCGTCAACTT CTATTTCCAC GACCGGCAGC TGCGCAACAA CCCGGGCCGC
GGCATGCCCG ACGGCAGCGA CCCGGCGGTG AGCCCGGTCA ACCCGTATGC CTGGCAGTGG
CACCACCACG ACAAAAGCCA ACCCGAGAAC CTGCCGTTCC TGCAGCGCCT GCGCGCGCTG
ATCGACGAGT ACCCCGACAC CACGATGGTC GGCGAGATCG GCGATGACGA CGGCCTGGCG
CGTGTGGCCG AGTACACCGG CGGCGGTGAC AAGCTGCACA TGGCGTACTG CTTCGACCTG
CTCGGCGAGC CGCACGGCGC ACCGTATCTG CACGGCGTGT TCACGCGCTT CAATCAGGTG
GTGGGCAGCG GCTGGCCGTG CTGGGCGATC ACCAACCACG ACATCCCGCG CGTGGCCACG
CGCTGGGGCG GCGCCAACCC GAGCATGGGC CTGTTGCGCG CCGCAGTGGC TCTTCAGCTG
AGCCTGCGTG GCACCGCCTG CATCTACCAG GGCGACGAGC TCGGCCTGCC CGAAGCCGAC
GTGGCGTTCG AGGATCTGCA GGACCCGTAC GGCATCACGA TGTGGCCCGA ATACAAGGGC
CGCGACGGCT GCCGCACGCC GATGGCGTGG GACTCGAAGG CCGCCGACCT CGGTTTCGGC
GGCGCGGCGG TCAACGCCAG GCCGTGGCTG CCGGTGGCAC AGAGCCATCG CGCGCTCGCG
GTCGACGTGC AGGGCGCCGA TCCGCAATCG CTGTTGAGCC ACTACCAGCA GCTGCTGCGC
TGGCGGCGCG GCGTGCCGGC GCTGATCCAC GGCGAGATGA CCTTGCTGAG CGTGCATCCG
CAGGTGCTCG CCTACCTGCG CAGCCATCAA GGCGAGCGCG TGCTGTGCGC CTTCAACCTG
AGCGACCAGC CGGTGACCTG GGACGCCACG ACGGCCGGCG TGGTGAGCGC GGTGCTCGGC
GACAGCGGCG CGCAGGGCGC GGCGCTGCAA GGCAGCCAGG TCCGCTTCGA TCCCTGGGGC
GTGCTGTTCG CCCGGCTGGT CTGA
 
Protein sequence
MKAPNNGWWR GGVIYQIYPR SYQDSNGDGI GDLPGITRRL DHIAALGADG IWLSPFFKSP 
MKDFGYDISD YNDVDPMFGT LADFKVLVDR AHALGLKVMI DQVYSHTADV HPWFVESRSS
RTNDKADWYV WADPLDDGNP PNNWLSIFGG SAWQWDTRRR QYYLHNFLTS QPDLNFHCPQ
VQEAVLASVK FWCEFGVDGY RLDVVNFYFH DRQLRNNPGR GMPDGSDPAV SPVNPYAWQW
HHHDKSQPEN LPFLQRLRAL IDEYPDTTMV GEIGDDDGLA RVAEYTGGGD KLHMAYCFDL
LGEPHGAPYL HGVFTRFNQV VGSGWPCWAI TNHDIPRVAT RWGGANPSMG LLRAAVALQL
SLRGTACIYQ GDELGLPEAD VAFEDLQDPY GITMWPEYKG RDGCRTPMAW DSKAADLGFG
GAAVNARPWL PVAQSHRALA VDVQGADPQS LLSHYQQLLR WRRGVPALIH GEMTLLSVHP
QVLAYLRSHQ GERVLCAFNL SDQPVTWDAT TAGVVSAVLG DSGAQGAALQ GSQVRFDPWG
VLFARLV