Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3326 |
Symbol | |
ID | 6163713 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3702137 |
End bp | 3703780 |
Gene Length | 1644 bp |
Protein Length | 547 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641666101 |
Product | alpha amylase catalytic region |
Protein accession | YP_001792349 |
Protein GI | 171060000 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 61 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCGC CCAACAACGG CTGGTGGCGC GGCGGGGTGA TCTACCAGAT CTACCCGCGC AGCTACCAGG ACAGCAACGG CGACGGCATC GGCGATCTGC CGGGCATCAC CCGGCGGCTC GACCACATCG CGGCTCTCGG CGCCGACGGC ATCTGGCTGT CGCCGTTCTT CAAGAGCCCG ATGAAGGACT TCGGCTACGA CATCAGCGAC TACAACGATG TCGACCCGAT GTTCGGCACG CTGGCCGACT TCAAGGTGCT GGTCGACCGC GCGCACGCGC TGGGCCTGAA GGTCATGATC GACCAGGTCT ATTCGCACAC CGCCGATGTG CACCCGTGGT TCGTCGAAAG CCGTTCGAGC CGCACCAATG ACAAGGCCGA CTGGTACGTG TGGGCCGATC CGCTCGACGA CGGCAATCCG CCCAACAACT GGCTGTCGAT CTTCGGCGGC AGCGCCTGGC AATGGGACAC GCGGCGCAGG CAGTACTACC TGCACAACTT CCTGACCAGC CAGCCCGACC TCAACTTCCA TTGCCCGCAG GTGCAGGAAG CGGTGCTGGC CTCGGTCAAG TTCTGGTGCG AGTTCGGGGT CGACGGCTAC CGGCTCGACG TCGTCAACTT CTATTTCCAC GACCGGCAGC TGCGCAACAA CCCGGGCCGC GGCATGCCCG ACGGCAGCGA CCCGGCGGTG AGCCCGGTCA ACCCGTATGC CTGGCAGTGG CACCACCACG ACAAAAGCCA ACCCGAGAAC CTGCCGTTCC TGCAGCGCCT GCGCGCGCTG ATCGACGAGT ACCCCGACAC CACGATGGTC GGCGAGATCG GCGATGACGA CGGCCTGGCG CGTGTGGCCG AGTACACCGG CGGCGGTGAC AAGCTGCACA TGGCGTACTG CTTCGACCTG CTCGGCGAGC CGCACGGCGC ACCGTATCTG CACGGCGTGT TCACGCGCTT CAATCAGGTG GTGGGCAGCG GCTGGCCGTG CTGGGCGATC ACCAACCACG ACATCCCGCG CGTGGCCACG CGCTGGGGCG GCGCCAACCC GAGCATGGGC CTGTTGCGCG CCGCAGTGGC TCTTCAGCTG AGCCTGCGTG GCACCGCCTG CATCTACCAG GGCGACGAGC TCGGCCTGCC CGAAGCCGAC GTGGCGTTCG AGGATCTGCA GGACCCGTAC GGCATCACGA TGTGGCCCGA ATACAAGGGC CGCGACGGCT GCCGCACGCC GATGGCGTGG GACTCGAAGG CCGCCGACCT CGGTTTCGGC GGCGCGGCGG TCAACGCCAG GCCGTGGCTG CCGGTGGCAC AGAGCCATCG CGCGCTCGCG GTCGACGTGC AGGGCGCCGA TCCGCAATCG CTGTTGAGCC ACTACCAGCA GCTGCTGCGC TGGCGGCGCG GCGTGCCGGC GCTGATCCAC GGCGAGATGA CCTTGCTGAG CGTGCATCCG CAGGTGCTCG CCTACCTGCG CAGCCATCAA GGCGAGCGCG TGCTGTGCGC CTTCAACCTG AGCGACCAGC CGGTGACCTG GGACGCCACG ACGGCCGGCG TGGTGAGCGC GGTGCTCGGC GACAGCGGCG CGCAGGGCGC GGCGCTGCAA GGCAGCCAGG TCCGCTTCGA TCCCTGGGGC GTGCTGTTCG CCCGGCTGGT CTGA
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Protein sequence | MKAPNNGWWR GGVIYQIYPR SYQDSNGDGI GDLPGITRRL DHIAALGADG IWLSPFFKSP MKDFGYDISD YNDVDPMFGT LADFKVLVDR AHALGLKVMI DQVYSHTADV HPWFVESRSS RTNDKADWYV WADPLDDGNP PNNWLSIFGG SAWQWDTRRR QYYLHNFLTS QPDLNFHCPQ VQEAVLASVK FWCEFGVDGY RLDVVNFYFH DRQLRNNPGR GMPDGSDPAV SPVNPYAWQW HHHDKSQPEN LPFLQRLRAL IDEYPDTTMV GEIGDDDGLA RVAEYTGGGD KLHMAYCFDL LGEPHGAPYL HGVFTRFNQV VGSGWPCWAI TNHDIPRVAT RWGGANPSMG LLRAAVALQL SLRGTACIYQ GDELGLPEAD VAFEDLQDPY GITMWPEYKG RDGCRTPMAW DSKAADLGFG GAAVNARPWL PVAQSHRALA VDVQGADPQS LLSHYQQLLR WRRGVPALIH GEMTLLSVHP QVLAYLRSHQ GERVLCAFNL SDQPVTWDAT TAGVVSAVLG DSGAQGAALQ GSQVRFDPWG VLFARLV
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