Gene Lcho_3322 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3322 
Symbol 
ID6163393 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3695405 
End bp3697423 
Gene Length2019 bp 
Protein Length672 aa 
Translation table11 
GC content69% 
IMG OID641666097 
Productalpha amylase catalytic region 
Protein accessionYP_001792345 
Protein GI171059996 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCCATTC GAAAATCTCC CGTCTCATCC CCCGCTTCTT CACGACTCGC CAGCCGCGCC 
GCCAGCGCTC AGATCGACGG TTCCGTCCCC GCCACGACCC GCGTCGCGGT GCCGGCCTGG
GCCGCATCCG ACGAGCAGCA GAGCCGCGTC TGGGCGGCCC TGAGCGAACA GCTCGGCGAC
GATGCGCAAT GGCCTGCATT CGACGCCCGC CTGCGCGCGC ATCTGGGCGA CCTGCGCCGC
GAGCTGGCGC CGCTGTACGG CGCGCGGCCG GACTTCGAAG CCTTTCTGAT CAAGCTGCTG
GGCAATGCCT TCAGCGCCTG GCGCGAACGC TCGCCCGAGC TGAAGGCGCT CGACCAGGCG
CGCGAGGCCG ATCCGCAATG GTTCCACTCG AACCGCATGC TCGGCGGCGT CTGCTACGTC
GACCTGTTCG CCGGCGACCT GAAAGGCATC GAGGCCAGCA TCCCCTATTT CAAGGAACTG
GGGCTGACCT ACCTGCACCT GATGCCGCCT TTTCTGTGCC CCGAGCCGCA CAGCGACGGC
GGCTATGCGG TGAGCAGCTA CCGGGCGGTC AAGCCGAGCC TGGGCCGCAT CGAGGATCTG
CGCCATCTGG CGCAACGGCT GCGCGAGGAG GGCATCTCGC TGGTGCTCGA CTTCGTCTTC
AACCACACCA GCGACGAACA CGACTGGGCC CGCGGCGCAC TCGCCAAGGA TCCGTTCTAC
AGCGAGTTCT TCTACATCTT CCCGGACCGC ACCCAGCCCG ACGCCTACGA GCGCACGGTG
CGCGAGATCT TCCCCGACGA ACACCCCGGC GCCTTCAGCC AGCTCGAGGA CGGCCGCTGG
GTCTGGACCA CCTTCCACAG CTACCAGTGG GACCTCAACT ACGGCAACCC CGAGGTCTTC
AACGCGATGG CCGGCGAGAT GCTGTTCATC GCCAACCTGG GCGTCGAGTT CCTGCGCATG
GACGCGGTGG CGTTCATCTG GAAGCGCCTG GGCACGCCTT GCGAGAACCT GCCCGAAGCG
CACCACCTGC TGCGCGCCTA CAACGCGCTG GCGCGCATCG CCGCACCGTC GCTGCTGTTC
AAGTCCGAGG CCATCGTGCA CCCGGACGAC GTGGTCAAGT ACATCGAACC GGCCGAGTGC
CAGATCTCGT ACAACCCGCT GCAGATGGCG CTGCTGTGGA ACACGCTGGC CACGCGCGAG
GTCAACATGC TGCAGAAGGC GCTGGAGCAG CGCCACCACA TCCCCGACGG CACCGCCTGG
GTCAACTACG TGCGCAGCCA CGACGACATC GGCTGGACCT TTGCCGATGA GGATGCGATC
CAGATGGGCA TCCAGGGCTT CGACCACCGC ACCTTCCTGA ACCGCTTCTA CGTCAACCGC
TTTGCCGGCA GCTTCGCGCG CGGCGTGCCG TTCCAGGACA ACCCGGCCAC CGGCGACTGC
CGCATCAGCG GCACGGCGGC GTCGCTGTGC GGGCTGGAGC AGGGCGACCC GCACGCGGTG
GCGCGGCTGC TGCTGCTGTA CGGCGTGGTG CTGTCGTCGG GCGGCATCCC GCTGATCTAC
CTGGGCGACG AGATCGGCGC GCTCAACGAC CTGCACTGGG CCGACGACCC CGGCCACGGC
GGCGACAGCC GCTGGGTGCA CCGCCCCGTG CGCGACCTGG CGCGCTCGGC CCAGCGCGAC
GACCCGAGCA CCGCGCCGGG CCGCATCTAC GCCGGACTGC GACACCTGAT CGCGCTGCGC
CAGCACCTGC CGTCGCTGGC CGGTGGCCGA CTGCATGCGT TCTGGACCCG CAACCGCTCG
GTGCTCGGTT ATCTGCGCAG CGGCGAGGGC CAGGGCGGCG GCGGCAACAT CCTCGTGCTC
GGCAATTTCA GCGAACACCC GCAGGCGATC GACGCGGCGG TGCTGCTGGG CATGCCGGCC
GCGGCGGTCG ACCTGATCGG CCAGACCGCG TTCAACCTGC GCACCGGTTT CACCCTGGCG
CCGTACCAGA TGGTGTGGCT CGATTGCCGG GGCGGTTGA
 
Protein sequence
MAIRKSPVSS PASSRLASRA ASAQIDGSVP ATTRVAVPAW AASDEQQSRV WAALSEQLGD 
DAQWPAFDAR LRAHLGDLRR ELAPLYGARP DFEAFLIKLL GNAFSAWRER SPELKALDQA
READPQWFHS NRMLGGVCYV DLFAGDLKGI EASIPYFKEL GLTYLHLMPP FLCPEPHSDG
GYAVSSYRAV KPSLGRIEDL RHLAQRLREE GISLVLDFVF NHTSDEHDWA RGALAKDPFY
SEFFYIFPDR TQPDAYERTV REIFPDEHPG AFSQLEDGRW VWTTFHSYQW DLNYGNPEVF
NAMAGEMLFI ANLGVEFLRM DAVAFIWKRL GTPCENLPEA HHLLRAYNAL ARIAAPSLLF
KSEAIVHPDD VVKYIEPAEC QISYNPLQMA LLWNTLATRE VNMLQKALEQ RHHIPDGTAW
VNYVRSHDDI GWTFADEDAI QMGIQGFDHR TFLNRFYVNR FAGSFARGVP FQDNPATGDC
RISGTAASLC GLEQGDPHAV ARLLLLYGVV LSSGGIPLIY LGDEIGALND LHWADDPGHG
GDSRWVHRPV RDLARSAQRD DPSTAPGRIY AGLRHLIALR QHLPSLAGGR LHAFWTRNRS
VLGYLRSGEG QGGGGNILVL GNFSEHPQAI DAAVLLGMPA AAVDLIGQTA FNLRTGFTLA
PYQMVWLDCR GG