Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3322 |
Symbol | |
ID | 6163393 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3695405 |
End bp | 3697423 |
Gene Length | 2019 bp |
Protein Length | 672 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641666097 |
Product | alpha amylase catalytic region |
Protein accession | YP_001792345 |
Protein GI | 171059996 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCCATTC GAAAATCTCC CGTCTCATCC CCCGCTTCTT CACGACTCGC CAGCCGCGCC GCCAGCGCTC AGATCGACGG TTCCGTCCCC GCCACGACCC GCGTCGCGGT GCCGGCCTGG GCCGCATCCG ACGAGCAGCA GAGCCGCGTC TGGGCGGCCC TGAGCGAACA GCTCGGCGAC GATGCGCAAT GGCCTGCATT CGACGCCCGC CTGCGCGCGC ATCTGGGCGA CCTGCGCCGC GAGCTGGCGC CGCTGTACGG CGCGCGGCCG GACTTCGAAG CCTTTCTGAT CAAGCTGCTG GGCAATGCCT TCAGCGCCTG GCGCGAACGC TCGCCCGAGC TGAAGGCGCT CGACCAGGCG CGCGAGGCCG ATCCGCAATG GTTCCACTCG AACCGCATGC TCGGCGGCGT CTGCTACGTC GACCTGTTCG CCGGCGACCT GAAAGGCATC GAGGCCAGCA TCCCCTATTT CAAGGAACTG GGGCTGACCT ACCTGCACCT GATGCCGCCT TTTCTGTGCC CCGAGCCGCA CAGCGACGGC GGCTATGCGG TGAGCAGCTA CCGGGCGGTC AAGCCGAGCC TGGGCCGCAT CGAGGATCTG CGCCATCTGG CGCAACGGCT GCGCGAGGAG GGCATCTCGC TGGTGCTCGA CTTCGTCTTC AACCACACCA GCGACGAACA CGACTGGGCC CGCGGCGCAC TCGCCAAGGA TCCGTTCTAC AGCGAGTTCT TCTACATCTT CCCGGACCGC ACCCAGCCCG ACGCCTACGA GCGCACGGTG CGCGAGATCT TCCCCGACGA ACACCCCGGC GCCTTCAGCC AGCTCGAGGA CGGCCGCTGG GTCTGGACCA CCTTCCACAG CTACCAGTGG GACCTCAACT ACGGCAACCC CGAGGTCTTC AACGCGATGG CCGGCGAGAT GCTGTTCATC GCCAACCTGG GCGTCGAGTT CCTGCGCATG GACGCGGTGG CGTTCATCTG GAAGCGCCTG GGCACGCCTT GCGAGAACCT GCCCGAAGCG CACCACCTGC TGCGCGCCTA CAACGCGCTG GCGCGCATCG CCGCACCGTC GCTGCTGTTC AAGTCCGAGG CCATCGTGCA CCCGGACGAC GTGGTCAAGT ACATCGAACC GGCCGAGTGC CAGATCTCGT ACAACCCGCT GCAGATGGCG CTGCTGTGGA ACACGCTGGC CACGCGCGAG GTCAACATGC TGCAGAAGGC GCTGGAGCAG CGCCACCACA TCCCCGACGG CACCGCCTGG GTCAACTACG TGCGCAGCCA CGACGACATC GGCTGGACCT TTGCCGATGA GGATGCGATC CAGATGGGCA TCCAGGGCTT CGACCACCGC ACCTTCCTGA ACCGCTTCTA CGTCAACCGC TTTGCCGGCA GCTTCGCGCG CGGCGTGCCG TTCCAGGACA ACCCGGCCAC CGGCGACTGC CGCATCAGCG GCACGGCGGC GTCGCTGTGC GGGCTGGAGC AGGGCGACCC GCACGCGGTG GCGCGGCTGC TGCTGCTGTA CGGCGTGGTG CTGTCGTCGG GCGGCATCCC GCTGATCTAC CTGGGCGACG AGATCGGCGC GCTCAACGAC CTGCACTGGG CCGACGACCC CGGCCACGGC GGCGACAGCC GCTGGGTGCA CCGCCCCGTG CGCGACCTGG CGCGCTCGGC CCAGCGCGAC GACCCGAGCA CCGCGCCGGG CCGCATCTAC GCCGGACTGC GACACCTGAT CGCGCTGCGC CAGCACCTGC CGTCGCTGGC CGGTGGCCGA CTGCATGCGT TCTGGACCCG CAACCGCTCG GTGCTCGGTT ATCTGCGCAG CGGCGAGGGC CAGGGCGGCG GCGGCAACAT CCTCGTGCTC GGCAATTTCA GCGAACACCC GCAGGCGATC GACGCGGCGG TGCTGCTGGG CATGCCGGCC GCGGCGGTCG ACCTGATCGG CCAGACCGCG TTCAACCTGC GCACCGGTTT CACCCTGGCG CCGTACCAGA TGGTGTGGCT CGATTGCCGG GGCGGTTGA
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Protein sequence | MAIRKSPVSS PASSRLASRA ASAQIDGSVP ATTRVAVPAW AASDEQQSRV WAALSEQLGD DAQWPAFDAR LRAHLGDLRR ELAPLYGARP DFEAFLIKLL GNAFSAWRER SPELKALDQA READPQWFHS NRMLGGVCYV DLFAGDLKGI EASIPYFKEL GLTYLHLMPP FLCPEPHSDG GYAVSSYRAV KPSLGRIEDL RHLAQRLREE GISLVLDFVF NHTSDEHDWA RGALAKDPFY SEFFYIFPDR TQPDAYERTV REIFPDEHPG AFSQLEDGRW VWTTFHSYQW DLNYGNPEVF NAMAGEMLFI ANLGVEFLRM DAVAFIWKRL GTPCENLPEA HHLLRAYNAL ARIAAPSLLF KSEAIVHPDD VVKYIEPAEC QISYNPLQMA LLWNTLATRE VNMLQKALEQ RHHIPDGTAW VNYVRSHDDI GWTFADEDAI QMGIQGFDHR TFLNRFYVNR FAGSFARGVP FQDNPATGDC RISGTAASLC GLEQGDPHAV ARLLLLYGVV LSSGGIPLIY LGDEIGALND LHWADDPGHG GDSRWVHRPV RDLARSAQRD DPSTAPGRIY AGLRHLIALR QHLPSLAGGR LHAFWTRNRS VLGYLRSGEG QGGGGNILVL GNFSEHPQAI DAAVLLGMPA AAVDLIGQTA FNLRTGFTLA PYQMVWLDCR GG
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