| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3321 |
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| Symbol | |
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| ID | 6163392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3693125 |
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| End bp | 3695311 |
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| Gene Length | 2187 bp |
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| Protein Length | 728 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641666096 |
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| Product | 1,4-alpha-glucan branching enzyme |
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| Protein accession | YP_001792344 |
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| Protein GI | 171059995 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGAGT CCTCAACCGT AACCGCCCTG ATGGCGGGTG ATCACGGCGA TCCGTTCGCC
GTGCTCGGTC TGCACACACA CGACGAGCGC TGGGTGCTGC GTGCGCTGCT GCCCGGCGCC
GTCGGCGTCG ACGTGATCGA CAAGGCCAGC GGCCAGAACG TGGCCAGCCT GCGCCGCATC
GTCGGCTCGG ACGTGTTCGA GGGCACGCTG CCCGAGCGCG AAGACCGGCT GGTCTACCAG
CTCGACGTCG ACTGGGGCAG CCATCACCAG GTGATGGAAG ACGCCTACCG CTTCTCGACC
CTGCTCGGCG CGATGGACCT CTGGCTGCTG GCCGAAGGCA CGCATCACCG GCCCTACGAA
CAGCTCGGCG CGCACCCGAC CGAGATCGAC GGCGTGGCCG GCACCCGCTT TGCCGTCTGG
GCGCCGAGCG CGCGGCGCGT GTCGGTGGTC GGCAGCTTCA ACAACTGGGA CGGCCGCCGC
CACGCCATGC GCGTGCGCAG CGAATGCGGC GTGTGGGAGA TCTTCGTGCC GCACGTCGGC
CCGGGCGACC TCTACAAGTA CGAGATCAAG GGCCAGGACG GCGGCCTGCG GCTCAAGGCC
GACCCGGTCG CCTTCCGCGC CGAAATGAGG CCGCAGACGG CCTCGGTGGT GCACGGCCTG
CCGCCCGTGG TGCCGAGCAC CGAACAGCGC CGCGACGCCA ACGCGCTGGG CGCGGCGGTG
TCGATCTACG AGGTCCACCT GGGCTCGTGG CGGCGCAACG AGCGCGGCGA ATGGCTCGAC
TACCGCCAGA TCGCCGAGCA GCTGATCCCC TACGCCAAGG ACATGGGTTT CACCCACCTC
GAACTGCTGC CGGTCAACGA GCATCCGTTC GACGGTTCCT GGGGTTATCA GCCCACCGGC
ATGTACGCGC CGACCTCGCG CTTCGGCACG CCCGATGATT TCCGCCACTT CGTTGCGCAG
GCGCACGAGG CCGGCCTGGG CGTGATCCTC GACTGGGTGC CGGGCCACTT CCCGACCGAC
GCCCACGGCC TGGGCCAGTT CGACGGCAGC CACCTCTACG AACACGCCGA TCCGCGCGAA
GGTTTCCACC AGGACTGGCA GACGCTGATC TACAACTACG GCCGCACGGA GGTGCGCAAC
TTCCTGATCG GCAACGCGCT GTACTGGATC GAGCGTTACG GCATCGACGG CCTGCGCGTC
GATGCGGTGG CCTCGATGCT GTACCGCGAC TACAGCCGCA AGGACGGCGA GTGGATCCCC
AACCAGTTCG GCGGCCGCGA GAACCTCGAG GCGATCGACT TCATGCGCCG CATGAACCAC
ATCGTCGGCA CCCAGCGGCC CGAGGCGATC ACGCTGGCCG AGGAGTCGAC CGCCTTCCCG
GGCGTGTCGC GCCCGCCCGC CCCCGATCTG CAAAGCGGCG GCCTGGGTTT CCACTACAAG
TGGAACATGG GCTGGATGAA CGACACCCTG CGCTACATGC AGCAGGATCC GGTGCATCGC
CAGTATCACC ACGGCCAGAT CACCTTCAGC CTGGTCTACG CCTTTACCGA GAATTTCGTG
CTGCCGCTTT CGCACGACGA GGTGGTGCAC GGCAAGGGTT CGATCCTGCA ACGCATGCCG
GGCGACGAAT GGCAGCGCTT TGCCAATCTG CGCGCCTATT ACGGTTTCAT GTGGGGGCAC
CCCGGCAAGA AACTGCTGTT CATGGGCTGC GAGTTTGGCC AGGGCGAAGA ATGGCATGCC
GAAAAAGGCC TGCCGTGGCA TTTGCTCGAT TACCCGAATC ACGCCGGCGT GCAGCGCCTG
GTGTGTGACC TCAATACCGT GTACCGGGAT TTTCCGGCGC TGCACCAGCT CGATTTCACG
CCCGACGGTT TCGGCTGGAT CAGCCATGAC GATGCGCAGA ATTCGGTCCT GTCATTCACC
CGCCATGCTG CCGACGGCAG TTTCGTGGTG GTCGTCTGCA ATTTCACGCC GCTGCCGCGC
ACGGGTTATC GCATCGGCGT GCCGGCCGCC GGCCATTACC GCGAGCTGAT CAATACCGAC
GCCGCGATCT ACGGCGGCAG CGGGGTGCAC AACGGCCTCT TGAGCACCGA GCCGGTGGCC
TCGCACGGTC GCGAGCAGTC GCTGGTGATC ACCGTGCCGC CGCTGGCCAC CGTGATGTGG
GTGTGCGAGG GCGGCGCTGC TTCCTGA
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| Protein sequence | MLESSTVTAL MAGDHGDPFA VLGLHTHDER WVLRALLPGA VGVDVIDKAS GQNVASLRRI
VGSDVFEGTL PEREDRLVYQ LDVDWGSHHQ VMEDAYRFST LLGAMDLWLL AEGTHHRPYE
QLGAHPTEID GVAGTRFAVW APSARRVSVV GSFNNWDGRR HAMRVRSECG VWEIFVPHVG
PGDLYKYEIK GQDGGLRLKA DPVAFRAEMR PQTASVVHGL PPVVPSTEQR RDANALGAAV
SIYEVHLGSW RRNERGEWLD YRQIAEQLIP YAKDMGFTHL ELLPVNEHPF DGSWGYQPTG
MYAPTSRFGT PDDFRHFVAQ AHEAGLGVIL DWVPGHFPTD AHGLGQFDGS HLYEHADPRE
GFHQDWQTLI YNYGRTEVRN FLIGNALYWI ERYGIDGLRV DAVASMLYRD YSRKDGEWIP
NQFGGRENLE AIDFMRRMNH IVGTQRPEAI TLAEESTAFP GVSRPPAPDL QSGGLGFHYK
WNMGWMNDTL RYMQQDPVHR QYHHGQITFS LVYAFTENFV LPLSHDEVVH GKGSILQRMP
GDEWQRFANL RAYYGFMWGH PGKKLLFMGC EFGQGEEWHA EKGLPWHLLD YPNHAGVQRL
VCDLNTVYRD FPALHQLDFT PDGFGWISHD DAQNSVLSFT RHAADGSFVV VVCNFTPLPR
TGYRIGVPAA GHYRELINTD AAIYGGSGVH NGLLSTEPVA SHGREQSLVI TVPPLATVMW
VCEGGAAS
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