Gene Lcho_3314 details

Gene Information

• Locus tag: Lcho_3314
• ID: 6160839
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3681143
• End bp: 3683083
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641666089
• Product: ribokinase-like domain-containing protein
• Protein accession: YP_001792337
• Protein GI: 171059988
• COG category: [G] Carbohydrate transport and metabolism; [S] Function unknown
• COG ID: [COG0524] Sugar kinases, ribokinase family; [COG3892] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 51
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGTGCCC TCAACTTCCC CTCCGATCGC CGCTTCGACC TGGCCTGCCT GGGCCGCCTG 
GCGGTCGATC TGTATGCCCA GCAGTTCGGC AGCCCGCTCG AGGACACCCG CTCGTTCTCG 
ATGACGCTCG GCGGCTCGTC GGGCAACATG GCCTTCGGCG TGGCGCGGCT GGGCCTGAAG 
AGCGCGATGA TTTCGCGCGT CGGCAACGAG CAGATGGGCC GCTTCCTGAC CGAGACGCTG 
GCACGCGAGG GCTGCGACGT CAGCCAGGTG CAGATCGACC CCCAGCGCCT GACCGCGCAG 
GTGCTGCTGG CGCTGAAGGA CCGCGACACC TTCCCGCTGC TGTTCATGCG CGAGAACTGC 
GCCGACATGG CGATCGACGC CGCGCTGATC GACGAATCGT TCATCGCCCA ATGCCGCGCG 
CTGGCCATCA CCGGCACGCA CCTGTCGACG CCCGGCACCC GGCGCGCCTC GCTGGCGGCG 
CTTGCCGCCG CGCGCCGCCA CGGCGTGGTG CGCGTGCTCG ACATCGACTA CCGCCCGGTG 
CTGTGGGGCC TGACCCCACG CGGCGCCGGC GAGAACCGCT ACGTGCCCGA TGCCGAGGTG 
ACGCTGCAGC TGCAGCAGGT GCTGTCGCAG TTCGACATGC TGGTGGGCAC CGAAGAAGAG 
TTCTTCATCG CCGGCGGTGC GCCCAACGAC CTGATGGCCT CGCTGCGCGC GGTGCGCGAG 
ATCTCGTCGG CGGTGCTGGT GGTCAAGCGC GGCGCGCTGG GCTGCAGCGT CATCGAGGGC 
TCGATCCCGG CGGCGATCGA CGACGCGCCC ACCTTCAAGG GCGAGCGCAT CGAGGTGCTC 
AACGTGCTGG GTGCGGGCGA CGCCTTCATG TCCGGCCTGA TGGCCAGCCT GCTGCGTGGC 
AAGGACTGGG CCGAATCGAC GAAGGTCGCC AACGCCTGCG GCGCGATCGT GGTGTCGCGC 
CACGCCTGCT CGGCCGCGAT GCCCACGCCC GCCGAGCTGG ACCACTGGTT CAGCGGCACG 
CGCAACCCCA AGCCCGACGC CGACCAGCAG CTCGCCCACC TGCACCGCGT CAGCCCGAAC 
CGCGCGCAGT GGAACGAACT CTGCGTGATG GCCTTCGACC ACCGCAGCCA GTTCTACGAC 
ATCGCCCGCG AAGCCGGCGT CAGCGACCGC CGCGTCCCGG CCCTCAAGCA GCTGCTGGTG 
AAAGCGGCCG AACAGGTCGA AGCCAGCCGC AATCTGCAAG GTCACATGGG CGTGCTGATC 
GACGGCAGCG ACTACGGCCG CGACGCATTG GCCAGCGCCA CCGGGCGCGA CTGGTGGGTC 
GGCCGGCCGG TCGAGCTGCC GAGCTCGCGG CCGCTGCGAT TCGACGGCAC CCGCTCGATC 
GGCAGCGCGC TGATCCACTG GCCGACCGAG CAGGTGGTCA AGTGCCTGGT GCATTACCAC 
CCGGACGACG CCGTCGACCT GCGCCTCGAA CAGGAAGCCC GCGTGCTCGA ACTGTGGGAA 
GCCACGCGCG AGAGCGGCAA CGAGCTGCTG CTCGAGATCA TCCCGCCCAA GGCCCTGACG 
CCCGCCGGCA CCGAGGACGA AGCCGTGCTG CGCGCGGTCA AGCGCTTCTA CAACCTCGGC 
GTCAAGCCCG AGTGGTGGAA ACTCGCGCCG ATGAGCGCGG ACGGCTGGTC GGCGCTGGAG 
GCGCTGGTGG CACAGCGTGA CCCGTTCTGC CGCGGCGCGG TGATCCTGGG ACTGAACCAG 
CCGCTCGACT ACCTGGCGGC GAGCTTCGCG CAGGCGACGA ATCCGATCGT CAAGGGTTTC 
ATGGTCGGCC GCACGCTGTG GGTCAGCGCC TCGCTGCGCT GGTTCAAGGG CGAGATCGAC 
GACGCTGCCT TCATCGACGA GGTGGCGCGC AACTTCACGG TGCTGGTGGA CGCCTGGAAG 
AACCGCCGCA ACGTGGCCTG A 

 

Protein sequence

MSALNFPSDR RFDLACLGRL AVDLYAQQFG SPLEDTRSFS MTLGGSSGNM AFGVARLGLK 
SAMISRVGNE QMGRFLTETL AREGCDVSQV QIDPQRLTAQ VLLALKDRDT FPLLFMRENC 
ADMAIDAALI DESFIAQCRA LAITGTHLST PGTRRASLAA LAAARRHGVV RVLDIDYRPV 
LWGLTPRGAG ENRYVPDAEV TLQLQQVLSQ FDMLVGTEEE FFIAGGAPND LMASLRAVRE 
ISSAVLVVKR GALGCSVIEG SIPAAIDDAP TFKGERIEVL NVLGAGDAFM SGLMASLLRG 
KDWAESTKVA NACGAIVVSR HACSAAMPTP AELDHWFSGT RNPKPDADQQ LAHLHRVSPN 
RAQWNELCVM AFDHRSQFYD IAREAGVSDR RVPALKQLLV KAAEQVEASR NLQGHMGVLI 
DGSDYGRDAL ASATGRDWWV GRPVELPSSR PLRFDGTRSI GSALIHWPTE QVVKCLVHYH 
PDDAVDLRLE QEARVLELWE ATRESGNELL LEIIPPKALT PAGTEDEAVL RAVKRFYNLG 
VKPEWWKLAP MSADGWSALE ALVAQRDPFC RGAVILGLNQ PLDYLAASFA QATNPIVKGF 
MVGRTLWVSA SLRWFKGEID DAAFIDEVAR NFTVLVDAWK NRRNVA