| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3310 |
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| Symbol | |
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| ID | 6161539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3675870 |
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| End bp | 3677060 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641666085 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001792333 |
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| Protein GI | 171059984 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGTG AACTTGTCGA GCAGGCACTC GCCCGCTGGT CGGCTCCGAT ACCGCCCGCA
TTGCGCGCCG ATTTCGATGC CTACCACCGC GCACAGAGCC TGCGCTTCCT GCTGCTGATG
AACCTGCTGG GCCAGGCCGC CTACGTCTCC TACGTGGCGG CCGATTACCT GGTGCTGCCC
GACATCGCGC ACGAGTCTGC GCGTGCGCGC TCGATCTTCC TGGCGATCAC CTTGCCGCTG
ACGCTGGCGG CCATGCGCTG GGTGCGCAGC ATCCACCTGC TCGACATGCT GCTGCCCACG
CTGATCCTGC TGGCCACGCT GATCTGGTTC GATCTGCTGG CGCGCAGCCA GATGCCGGCG
GTGGCGACCT ACATCTACGC CTCGATGATC TTCATCGTGC TGGCCAACCT GGGCGTGCGG
GTCGACTTCC TGCCGGCGCT GGGCCTGTCG CTGCTGATCT CGGCGGCGAT CCTGCACGGC
GTGCTGCGAC TCCATCGCGA CGACCCGCAG GCGGTGATGG TGTTCGTGCT GGTCTACCTG
CCGATGCTGC TGTTCAGCCT GTTCACCAGC TGGCACACCA CGCTGTCGGG CCGGCGCGCG
TATCTGCATT CGGTGCTCGA CGGCATGAAC CGCCAGGCGC TGCTGCAGGC CAACGAAAAG
CTGCACGCCC TGGCCCAGAC CGACGGCCTG ACCGGCATCG CCAACCGGCG CCAGTTCGAC
GAGCAGGCGC AGCTGTTCTG GGACAAGGCC CGGCAGACCG GCAAGCCGAT GGCGCTGCTG
ATCATCGATC TCGACCACTT CAAGGCCTAC AACGACCACT ACGGCCACCA GGCCGGCGAC
GACTGCCTGG TGCGGGTGGC GCGCGTGCTG TCCGAGCACA TGCGCGAAGG CGACTACTTC
GCCGGCCGCT ACGGCGGCGA GGAGTTCGCC GTGATGCTGG CGCCGGCCTG GCCCGCCCTG
GCCGGTGCGG TGGCCCAGCG CCTGACGCAG GCGGTGCGGC AGCTGGGCAT CGCGCACGCG
CACCGTGGCG ACGGGCTGTC GGTGGTGACG GTCAGCATCG GCGCGGCGCT GTCGTCCGAC
GACGGCGTGC ACGGTGTCAC CGACCTGATC CGCTGCAGCG ACGCGCTGCT CTACGAGGCC
AAGCGCAGCG GCCGCAACGG CTACAAGGTG GCGCCCCGCC CGCTATCCTG A
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| Protein sequence | MNRELVEQAL ARWSAPIPPA LRADFDAYHR AQSLRFLLLM NLLGQAAYVS YVAADYLVLP
DIAHESARAR SIFLAITLPL TLAAMRWVRS IHLLDMLLPT LILLATLIWF DLLARSQMPA
VATYIYASMI FIVLANLGVR VDFLPALGLS LLISAAILHG VLRLHRDDPQ AVMVFVLVYL
PMLLFSLFTS WHTTLSGRRA YLHSVLDGMN RQALLQANEK LHALAQTDGL TGIANRRQFD
EQAQLFWDKA RQTGKPMALL IIDLDHFKAY NDHYGHQAGD DCLVRVARVL SEHMREGDYF
AGRYGGEEFA VMLAPAWPAL AGAVAQRLTQ AVRQLGIAHA HRGDGLSVVT VSIGAALSSD
DGVHGVTDLI RCSDALLYEA KRSGRNGYKV APRPLS
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